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Microbiome Data Science Team
… transition of biology into data science.  Research in the Kyrpides group focuses on Microbiome Data Science and … al. (2016) Uncovering Earth’s virome.  Nature   536:425-30 Kyrpides NC. et al. (2016) Microbiome Data Science: … whole genome sequences. Nucleic Acids Res. 43(14):6761-71 Kyrpides NC et al. (2014) Genomic Encyclopedia of Bacteria …
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Nikos Kyrpides
… Dr. Kyrpides joined the DOE Joint Genome Institute in 2004 to … 2011. Prior to joining the DOE Joint Genome Institute, Dr. Kyrpides led the development of the genome analysis and … at Urbana-Champaign and at Argonne National Laboratory. Dr. Kyrpides’ research focus on Microbiome Research with an …
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Single Cell Research Group
… McMahon K. D., Konstantinidis K. T., Eloe-Fadrosh E. A., Kyrpides N. C., Woyke T . Giant virus diversity and host … Terrapon N., Lapebie P., Drula E., Lombard V., Rubin E., Kyrpides N. C., Henrissat B., Woyke T ., Ivanova N. N., … Vierheilig J., Daims H., Horn M., Wagner M., Jensen G. J., Kyrpides N. C., Koonin E. V., Woyke T . Giant viruses with …
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Environmental Genomics Group
… M, Berg M, Chen IA, Chu K, Clum A, Huntemann M, Ivanova NN, Kyrpides NC, Mukherjee S, Reddy TBK, Roux S, Seshadri R, … Axel Visel, Tanja Woyke, Emiley A Eloe-Fadrosh, Nikos C Kyrpides, Natalia N Ivanova, The IMG/M data management and …
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Partnerships: Adopt-A-Genome
… J. Cortez, J. Mande , C. Fondse , V. Thiel, K. LaButti, N. Kyrpides, R. Seshadri, T. A. Van Laar. Draft Genome Sequence … J. Cusack, I. Del Rio, S. Spring, N. Kyrpides, N. Ivanova, R. Seshadri, M. Escobar. Draft genome …
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JGI Contributes Nine to 2022 Highly Cited Researchers List
… Natalia Ivanova (Biology and Biochemistry)  Nikos Kyrpides (Biology and Biochemistry)  Dan Rokhsar … contributions from  Ivanova, Woyke, Marcel Huntemann, Nikos Kyrpides  and Simon Roux — features 600 genome sequences for … bioinformatics have sped up the study of giant viruses.  Kyrpides and the JGI’s IMG/M Data Portal were instrumental …
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JGI on the 2020 Highly Cited Researchers List
… Chen Igor Grigoriev Jane Grimwood Natalia Ivanova Nikos Kyrpides Dan Rokhsar Simon Roux Asaf Salamov Jeremy Schmutz … for the first time. I-Min Chen ,  Natalia Ivanova ,  Nikos Kyrpides ,  Simon Roux , Susannah Tringe , and Tanja Woyke  … Microbial Genomes & Microbiomes (IMG/M) platform. Nikos Kyrpides and  Simon Roux are part of a team that  developed …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… Health’s (NIH)  Common Fund Human Virome Program .  Nikos Kyrpides , head of the JGI’s  Microbiome Data Science , … project with JGI colleagues Antonio Camargo and Simon Roux. Kyrpides is part of another project led by Owen White at the … and, Make virome data available to the research community. Kyrpides’ project, “ Advanced analytics for uncovering virus …
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JGI Contributes Eight to 2023 Highly Cited Researchers list
… Natalia Ivanova (Biology and Biochemistry) Nikos Kyrpides (Biology and Biochemistry) Dan Rokhsar … to several articles in the past year, including: Nikos Kyrpides, Natalia Ivanova and Simon Roux, along with data … of microbes by looking at protein function within them. Kyrpides and Roux also worked together on the development of …
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Promoting the Power of Viral Metagenomics
… by JGI researchers Lee Call,  Stephen Nayfach and  Nikos Kyrpides , was  recently published in the journal  Annual … fellow in the JGI Microbiome Data Science Group led by Kyrpides. Since early 2020, people all over the world have …
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JGI on the 2021 Highly Cited Researchers List
… publication year are: Igor Grigoriev Natalia Ivanova Nikos Kyrpides Dan Rokhsar Simon Roux Jeremy Schmutz Susannah … Integrated Microbial Genomes & Microbiomes (IMG/M) Nikos Kyrpides was part of an international research consortium …
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Doubling Down on Known Protein Families
… families in order to predict new functions,” said  Nikos Kyrpides , senior author of the study and head of the JGI’s  … not have any known function, but we knew the families,” Kyrpides said. Yet, “almost 20 years of metagenomic data and … locations or habitats that align very well, randomly,” Kyrpides explained. “Replicating that 100 times would have …
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