JGI Home

Community Sequencing Program
Sequencing Plans for 2013

 

Proposer Affiliation Project Description
Bartley, Laura University of Oklahoma Switchgrass resequencing to enhance biofuel production
Bartley, Laura University of Oklahoma Panicum virgatum RNA sequencing to identify gene expression changes related to biofuel traits
Blanchard, Jeffrey University of Massachusetts Microbial community dynamics in a long-term soil warming chronosequence
Boeke, Jef Johns Hopkins University Synthesis of the largest yeast chromosome, chromosome IV, and the synthetic yeast genome Sc2.0
Brune, Andreas Max-Planck Institute, Marburg, Germany Metagenomics and metatranscriptomics of the gut microbiota of higher termites
Constant, Philippe INRS, Canada Metagenomic and Metatranscriptomic Analysis of Soil Biogeochemical Processes Sustained by Interspecific Transfer of Molecular Hydrogen
Cottrell, Matthew University of Delaware Actively growing bacteria in coastal waters of the west Antarctic Peninsula identified by metatranscriptomic analysis
Denef, Vincent University of Michigan The bacterial component of the microbial loop in the Laurentian Great Lakes and their role in the carbon cycle.
Deutschbauer, Adam LBNL Functional Encyclopedia of Bacteria and Archaea (FEBA)
Francis, Christopher Stanford University Metagenomic and biogeochemical characterization of marine ammonia-oxidizing archaeal communities in a coastal upwelling system
Glass, N. Louise UC Berkeley The Fungal Nutritional ENCODE project
Greenshields, Dave Novozymes Genome sequencing of phosphate-solubilizing Penicillium species to understand fungal contributions to the phosphorus cycle.
Hallam, Steven University of British Columbia, Canada Opening a single-cell genomic window on microbial ecotype selection in expanding marine oxygen minimum zones
Jansson, Janet LBNL Next Generation Ecosystem Experiment (NGEE) in the Arctic
Juenger, Tom University of Texas at Austin Resequencing diverse collections and mapping resources for Panicum hallii
Kema, G. H. J. Wageningen University and Research Centre, Netherlands Deciphering the Interactome of Dothideomycete-bioenergy crops
Klenk, Hans-Peter DSMZ, Germany Genomic Encyclopedia of Archaeal and Bacterial Type Strains, Phase II: from individual species to whole genera
Martin, Francis INRA, France Mycorrhizal Genomics Initiative: Exploring the Symbiotic Transcriptomes
Nichols, Nancy USDA-ARS Genome sequence of the inhibitor-tolerant Ascomycete Coniochaeta ligniaria NRRL30616
Nusslein, Klaus University of Massachusetts Profiling Metatranscriptomic Consequences of Amazon Deforestation at Different Spatial Scales
Picard, Kathryn Duke University Functional genomics of the saprotrophic-symbiotrophic fungus Rhizidium phycophilum and its algal partner Bracteacoccus sp.: increasing algal biomass through symbiosis
Record, Eric Aix-Marseille University, France Survey of lignocellulolytic capabilities over the order Polyporales (Fungi, Basidiomycetes)
Sczyrba, Alex Bielefeld University, Germany Metagenome, metatranscriptome and single cell genome sequencing to uncover the microbiology and functional potential of biogas-producing microbial communities from production-scale biogas plants
Shapiro, Lucy Stanford University Defining the essential symbiosis genome of Sinorhizobium meliloti
Siegel, Justin University of Washington Enhancement of Biofuel Production and Carbon Fixation Pathways through Metagenomic Enzyme Design
Stacey, Gary University of Missouri DOE JGI Flagship Plant Gene Atlas Pilot
Stepanauskas, Ramunas Bigelow Laboratory for Ocean Sciences Enigmatic life underneath us: genomic analysis of deep subsurface microorganisms
Teeling, Hanno Max-Planck Institute, Bremen, Germany COGITO (Coastal Microbe Genomic & Taxonomic Observatory)