Community Sequencing Program
Sequencing Plans for 2010
For status information, see the Genome Projects section.
| Proposer | Affiliation | Project Description |
|---|---|---|
| Eukaryotes | ||
| Collier, Jackie | Stony Brook University | Four Labyrinthulomycete species |
| Cullen, Daniel | US Forest Service, Forest Products Laboratory | Homkaryotic derivative of Postia placenta |
| Cullen, Daniel | US Forest Service, Forest Products Laboratory | Lignin-degrading fungus Phlebiopsis gigantea |
| Goodwin, Stephen | Purdue University | Dothideomycetes plant pathogens |
| Grossniklaus, Ueli | University of Zurich | Apomictic plant Boechera holboellii |
| Koppisch, Andy | Los Alamos National Laboratory | Colony forming microalga Botryococcus braunii var Showa |
| Kubisiak, Thomas | US Forest Service, Southern Research Station | Fusiform rust fungus Cronartium quercuum f.sp. fusiforme |
| Martin, Francis | Institut National de la Recherche Agronomique | Pan-global basidiomycetes Pisolithus tinctorius and Pisolithus microcarpus |
| Moreau, Herve | CNRS, France | Photosynthetic marine eukaryotes phytopicoplancton |
| Paterson, Andrew | University of Georgia | Resequencing sorghum |
| Phister, Trevor | North Carolina State University | Completion of the Dekkera (Brettanomyces) bruxellensis genome sequence |
| Pringle, Anne | Harvard University | Cellulose degrading fungus Amanita thiersii |
| Quatrano, Ralph | Washington University in St. Louis | Ceratodon purpureus (moss) |
| Reeve, Wayne | Murdoch University | Phytopathogenic oomycete Phytophthora cinnamomi |
| Roossinck, Marilyn | Samuel Roberts Noble Foundation | Alteration of Curvularia protuberata transcripts due to presence of Curvularia thermal tolerance virus |
| Vyverman, Wim | Ghent University | Diatom transcriptome and genome |
| Weeks, Donald | University of Nebraska-Lincoln | Transcriptome analyses of Chlamydomonas and Chlorella |
| Zhong, Shaobin | North Dakota State University | Fungal pathogen Cochliobolus sativus |
| Bacteria and Archaea | ||
| Anderson, Iain | DOE Joint Genome Institute | Xylan degraders |
| Bayer, Travis | University of California, San Francisco | Actinotalea fermentans |
| Bryant, Donald | Penn State University | Representative photosynthetic purple sulfur bacteria |
| Cooper, Vaughn | University of New Hampshire | Adaptive mechanisms in Burkholderia biofilms |
| Copley, Shelley | University of Colorado at Boulder | Sphingobium chlorophenolicum |
| Daly, Michael | Uniformed Services University of the Health Sciences | Radiation-resistant bacterium Deinococcus grandis |
| Dopson, Mark | Umeå University | Psychrotolerant Acidithiobacillus species |
| Dvornyk, Volodymyr | University of Hong Kong | Nostoc linckia from “Evolution Canyon” |
| Edwards, Elizabeth | University of Toronto | Novel acetogenic bacterial isolates from dechlorinating microbial mixed cultures |
| Green, Stefan | Florida State University | Denitrifying bacterial isolates |
| Haggblom, Max | Rutgers University | Acidobacterium species from Arctic tundra soils |
| Lewis, Gillian | University of Auckland | Freshwater manganese depositing β-proteobacterium (Siderocapsaceae) |
| Liao, James | University of California, Los Angeles | Reverse metabolic engineering of Escherichia coli |
| Mavrommatis, Konstantinos | DOE Joint Genome Institute | Cyanobacteria (Synechocystis) transcriptome |
| Mayali, Xavier | Lawrence Livermore National Laboratory | Marine Roseobacter RCA cluster bacterial strain LE17 |
| Mills, David | University of California, Davis | Acetobacter aceti ATCC 23746 |
| Muyzer, Gerard | Delft University of Technology | Haloalkaliphilic chemolithoautotrophic Thioalkalivibrio bacteria |
| Nesbø, Camilla | University of Alberta | Thermotogales strain mesG1.Ag.4.1 |
| Pappas, Katherine | University of Athens | Zymomonas mobilis transcriptomes and resequencing Z. mobilis industrial strain ZM4 |
| Robb, Frank | Center of Marine Biotechnology | Carbon monoxide oxidizing thermophiles |
| Rodrigues, Jorge | University of Texas at Arlington | Genome closure of lignocellulosic degrader Verrucomicrobium sp. strain TAV2. |
| Sanchez Amat, Antonio | University of Murcia | Marine bacterial genus Marinomonas |
| Smidt, Hauke | Wageningen University | Halorespiring Firmicutes |
| Stabb, Eric | University of Georgia | Mutations in Vibrio fischeri |
| Stein, Lisa | University of Alberta | Methanotrophic Bacteria from diverse environments |
| Tisa, Louis | University of New Hampshire | An atypical Frankia isolate and Non-Frankia Actinobacteria from Actinorhizal Plants |
| Vieille, Claire | Michigan State University | Resequencing of Actinobacillus succinogene |
| Ward, David | Montana State University | Synechococcus cyanobacterial isolates |
| Metagenomes | ||
| Breitbart, Mya | University of South Florida | Modern freshwater microbialites |
| Chistoserdova, Ludmila | University of Washington | Functional metagenomics of methane and nitrogen cycles in freshwater lakes |
| Davidson, Seana | University of Washington | Metagenome function of the Earthworm egg capsule bacterial community |
| Deng, Li | University of Arizona | Viruses that infect freshwater cyanobacteria |
| Edwards, Elizabeth | University of Toronto | Dehalobacter-containing dechlorinating community |
| Hedlund, Brian | University of Nevada, Las Vegas | Great Boiling Spring sediment and water microbial communities |
| Kirchman, David | University of Delaware | Metagenomic analysis of methane degradation in Arctic coastal waters and sediments |
| Madsen, Eugene | Cornell University | Naphthalene biodegrading microbial community |
| Mincer, Tracy | Woods Hole Oceanographic Institute | Natural microbial community associated with the cyanobacteria Trichodesmium |
| Moon, Christina | AgResearch Limited | Lignocellulolytic enzyme discovery from the rumen |
| Powell, Amy | Sandia National Laboratories | Eukaryotic microbial metatranscriptome of blue grama grass rhizosphere soils |
| Stepanauskas, Ramunas | Bigelow Laboratory for Ocean Sciences | Single cell genome sequencing of mesopelagic bacterioplankton |
| Sullivan, Matthew | University of Arizona | Viral community in the Subarctic Pacific Ocean |
| Sullivan, Matthew | University of Arizona | Viral community in the Mediterranean Sea |
| Taylor, Mike | University of Auckland | Microbial symbionts of New Zealand's endemic wood-degrading insects |
| Waldrop, Mark | US Geological Services | Permafrost Soil Microbiota |
| Ward, Naomi | University of Wyoming | Metatranscriptomic analysis of bacterial-algal interactions |
| Warnecke, Falk | DOE Joint Genome Institute | Desert locust (Schistocerca gregaria) |
| Worden, Alexandra | Monterey Bay Aquarium Research Institute | Metagenomics of uncultured marine eukaryotes |
