Community Sequencing Program
Sequencing Plans for 2005
This page is updated at the beginning of every month.
| Organism | Proposer | Affiliation | Status* | Public Release** |
|---|---|---|---|---|
| Microbes | ||||
| Olavius algarvensis symbionts Why? |
Dubilier | Max Planck Institute of Marine Microbiology | In production | |
| Crenarchaeota Why? |
Delong | MIT | In production | |
| Marinobacter aquaeolei VT8 Why? |
Edwards | Woods Hole Oceanographic Institution | Finished | 1/3/2007 |
| Staphylococcus aureus subsp.
aureus JH1 and JH9 Why? |
Tomasz | Rockefeller University | Finished | JH1 7/11/2007 JH9 5/23/2007 |
| Prochlorococcus ACM A12II Why? |
Chisholm | MIT | Done (draft) | |
| Rhodocyclus-like polyphosphate accum. Why? |
Hugenholtz | JGI | In draft assembly | |
| Rhodobacter sphaeroides ATCC17025 and ATCC17029 Why? |
Kaplan | University of Texas, Houston | Finished | ATCC 17025, 5/9/2007; ATCC 17029, 3/19/2007 |
| Contaminated groundwater Why? |
Zhou | ORNL | Done (draft) | |
| Lactobacillus
reuteri strains 100-23 and F275 Why? |
Tannock | University of Otago, Dunedin, NZ | F275 finished, 100-23 done (draft) | 100-23,
4/3/2006 (draft) and F275, 6/6/2007 |
| Ignicoccus hospitalis KIN4/I | Podar | Diversa | Finished | 9/17/2007 |
| Bacillus cereus
subsp. cytotoxis NVH 391-98 and Bacillus weihenstephanensis KBAB4 Why? |
Sorokin | INRA, France | Finished | NVH 391-98, 7/18/2007; KBAB4, 1/14/2008 |
| Basal Organisms | ||||
| Selaginella moellendorffii Why? |
Banks | Purdue University | In finishing | Released (draft) |
| Trichoplax Why? |
DellaPorta | Yale University | In finishing | Released (draft) |
| Sporobolomyces roseus Why? |
Wolfe | Trinity College, Dublin | Done (draft) | Released (draft) |
| Reniera Why? |
Degnan | University of Queensland, Australia | In assembly | Reads released |
| Mycosphaerella graminicola Why? |
Goodwin | Purdue University | Finished | Released (draft) |
| Spironucleus vortens and Naegleria gruberi Why? |
Cande | UC Berkeley | S. vortens in assembly, N.g. in finishing | N. gruberi released (draft) |
| Higher Animals and Plants | ||||
| Physcomitrella patens Why? |
Mishler | UC Berkeley | Done (draft) | Released (draft) |
| Lottia gigantea (limpet) Why? |
Edsinger-Gonzalez, Rokhsar, Lindberg | UC Berkeley, JGI | Done (draft) | Released |
| Helobdella robusta (leech) Why? |
Weisblat | UC Berkeley | Done (draft) | Released (draft) |
| Capitella sp. I Why? |
Seaver | University of Hawaii | Done (draft) | Released (draft) |
| ESTs and Targeted Sequencing | ||||
| Alvinella pompejana Why? |
Tainer | Scripps Research Institute | Done (draft) | |
| Seed plant mitochondria (Amborella trichopoda, Citrullus lanatus watermelon, Cucumis melo (melon), Cucumis melo Iroquois, C. sativus, Cucurbita pepo zucchini, Digitalis purpurea, Liriodendron tulipifera, Plantago lanceolata, Pelargonium hortorum, Plantago media, Cucumis metulliferus, Vigna radiata) Why? |
Palmer | Indiana University, Bloomington | C.s., C. metulliferus in production; D.p., C.m.I., A.t., C.l., C.p., L.p., P.l., P.h., P.m., V.r. done (draft) | |
| Karenia brevis Why? |
Bhattacharya | University of Iowa | Finished | |
| Dipteran fosmids Why? |
Eisen | LBNL | In production | |
*"Pending" indicates that we are waiting for DNA or the DNA is waiting to enter the production process; "in production" includes both library creation and production sequencing; "draft assembly" is the first assembly, made without finishing the genome; "finishing" is postproduction work not carried out for all organisms; "final assembly" is the process of assembling the finished genome; "annotation" refers to automated finding of genes and assignment of functions; genomes on which we do not plan further work are labeled "done".
**"Reads released" indicates that reads have been sent to the GenBank Trace Archive; release dates indicate the date an assembly was made publicly available.
