All Sequencing Projects
Data on this page is updated at the beginning of every month.
Community Sequencing Program FY2008
| Organism | Proposer | Affiliation | Status* | Public Release** |
|---|---|---|---|---|
| Large Eukaryotes | ||||
| Eucalyptus tree Why? |
Myburg | Univ. of Pretoria | In production | |
| Foxtail millet (Setaria italica) Why? |
Bennetzen | Univ. of Georgia | Pending | |
| Porphyra purpurea (a marine red alga) Why? |
Brawley | Univ. of Maine | Pending | |
| Small Eukaryotes | ||||
| Agaricus bisporus (a leaf-litter degrading homobasidiomycete ) Why? |
Challen | Univ. of Warwick | Pending | |
| Heterodera glycines (Soybean Cyst Nematode) Why? |
Lambert | Univ. of illinois at Urbana-Champaign | Pending | |
| Marchantia polymorpha Why? |
Bowman | Monash Univ. and Univ. of California Davis | Pending | |
| Paxillus involutus (an ectomycorrhizal fungus) Why? |
Tunlid | Lund Univ. | Pending | |
| Phaeocystis antarctica: A dominant phytoplankter and ice alga in the Southern Ocean Why? |
Berg | Stanford Univ. | In production | |
| Phaeocystis globosa Why? |
Allen | The Inst. for Genomic Research | Pending | |
| ESTs for Pines and Other Conifers Why? |
Dean | Univ. of Georgia | In production | |
| Tetrahymena thermophila strain SB210 Why? |
Collins | Univ. of California Berkeley | In production | |
| Metagenomes | ||||
| Type I Accumulibacter Why? |
McMahon | Univ. of Wisconsin-Madison | In production | |
| Anammox bacteria (Scalindua marina, Brocadia fulgida, and Anammoxglobus propionicus) Why? |
Jetten | Radboud Univ. | In production | |
| A biogas-producing microbial community Why? |
Wu | Univ. of California Davis | Pending | |
| Extreme microbial habitats across the Yellowstone geothermal ecosystem Why? |
Inskeep | Montana State Univ. | In production | |
| Isolates | ||||
| Allochromatium vinosum DSM 180(T) Why? |
Dahl | Univ. of Bonn | In production | |
| Uncultivated methane-oxidizing archaeon ANME-1 Why? |
Hallam | Univ. of British Columbia | Pending | |
| Budding and non-budding stalked bacteria from aquatic environments (Asticcacaulis biprosthecum, Asticcacaulis excentricus, Brevundimonas subvibrioides, Ancalomicrobium adetum, Hyphomicrobium denitrificans, and Rhodomicrobium vannielii) Why? |
Brun | Indiana Univ. | A. excentricus and B. subvibrioides in production, others pending | |
| Diaphorobacter sp. strain TPSY, Ferrutens nitratireducens strain 2002, and Azospira suillum strain PS Why? |
Coates | Univ. of California Berkeley | In production | |
| Frankia strains (EuI1c, BCU110501, R43, BMG5.12, and AmMr) Why? |
Tisa | Univ. of New Hampshire | Pending | |
| Haloalkaliphilic sulfate-, thiosulfate- and sulfur-reducing bacteria (Desulfonatronovirga dismutans ASO3-1, Desulfovibrio alkaliphilus AHT2, and Dethiobacter alkaliphilus AHT1) Why? |
Muyzer | Delft Univ. of Technology | In production | |
| Halothiobacillus neapolitanus and Thiomonas intermedia Why? |
Heinhorst | Univ. of Southern Mississippi | In production | |
| Thermophilic or hyperthermophilic methanoarchaea within the Methanococcales (Methanothermococcus okinawensis IH1, Methanotorris igneus Kol 5, Methanotorris formicicus Mc-S-70, Methanocaldococcus fervens AG86, Methanocaldococcus infernus ME, Methanocaldococcus vulcanius M7, and Methanocaldococcus strain FS406-22) Why? |
Whitman | Univ. of Georgia | M. igneus, M. fervens, and M. infernus in production, others pending | |
| Type I and Type II methanotrophic bacteria (Methylomicrobium album BG8 and Methylosinus trichosporium OB3b) Why? |
Stein | Univ. of California Riverside | In production | |
| Two Micromonosporas (aurantiaca and L5) Why? |
Hirsch | Univ. of California Los Angeles | Pending | |
| Natrialba magadii ATCC 43099 Why? |
Maupin-Furlow | Univ. of Florida | In production | |
| Pseudonocardia dioxanivorans CB1190 Why? |
Mahendra | Univ. of California Berkeley | In production | |
| Selenospirillum indicus Why? |
Bini | Rutgers Univ. | Pending | |
| Starkeya novella Why? |
Kappler | Univ. of Queensland | In production | |
| Thermovibrio ammonificans DSM 15698 Why? |
Vetriani | Rutgers Univ. | Pending | |
| Variovorax paradoxus strains (S110 and EPS) Why? |
Han | Rensselaer Polytechnic Inst. | In production | |
| Zymomonas mobilis strains: Zymomonas mobilis strains: subsp. mobilis ATCC 10988, ATCC 29191, ATCC 31821 (ZM4), CP4; subsp. pomaceae ATCC 29192; sp. NCIB 11163 Why? |
Pappas | Univ. of Athens | In production | |
Community Sequencing Program FY2007
| Organism | Proposer | Affiliation | Status* | Public Release** |
|---|---|---|---|---|
| Large Eukaryotes | ||||
| Aquilegia formosa Why? |
Hodges | UC Santa Barbara | In production | |
| Brachypodium distachyon (Poaceae) Why? |
Vogel | USDA-ARS | In production | |
| Gossypium (cotton) Why? |
Paterson | Univ. of Georgia | In production | |
| Manihot esculenta (cassava) Why? |
Fauquet | Danforth Plant Science Ctr. | In finishing | |
| Small Eukaryotes | ||||
| Cryphonectria parasitica (chestnut blight fungus) Why? |
Nuss | Univ. of Maryland Biotech. Inst. | In finishing | |
| Reef-building corals and dinoflagellate symbionts (ESTs from Acropora palmata, Montastraea faveolata, and Symbiodinium clade A and clade B) Why? |
Medina | Univ. of California, Merced | Clade B pending, others in production | |
| Fragilariopsis cylindrus (a diatom) Why? |
Mock | Univ. of Washington | In production | |
| Guillardia theta and Bigelowiella natans Why? |
Archibald | Dalhousie Univ. | G.t. in assembly, B.n. in production | |
| Heterobasidion annosum Why? |
Stenlid | Swedish Univ. of Agricultural Sciences | In production | |
| Three species of Neurospora (N. discreta, N. tetrasperma FGSC2508, N. tetrasperma FGSC2509) Why? |
Taylor | Univ. of California, Berkeley | discreta in finishing, 2508 and 2509 done (draft) | |
| Peronosporomycete mtDNAs (26) Why? |
Hudspeth | Northern Illinois Univ. | Pending | |
| Pleurotus ostreatus (oyster mushroom) Why? |
Pisabarro | Public Univ. of Navarre | In production | |
| Riftia pachyptila (deep-sea tubeworm) Why? |
Girguis | Harvard Univ. | Pending | |
| Switchgrass Why? |
Tobias | USDA-ARS | Pending | |
| Tetranychus urticae (two-spotted spider mite) Why? |
Grbic | Univ. of Western Ontario | In production | |
| Thellungiella halophila Why? |
Schumaker | Univ. of Arizona | In production | |
| Mating loci from Volvox carteri and Chlamydomonas reinhardtii Why? |
Umen | Salk Inst. | Volvox in assembly, Chlamy In production (at Stanford) | Volvox released (draft) |
| Bacteria and Archaea | ||||
| Candidatus Amoebophilus asiaticus 5a2 and Encarsia symbiont Cand. Cardinium hertigii Why? |
Horn | Univ. of Vienna | C.h. pending, A.a. in finishing (at LLNL) | A.a. released 2/25/2008 (draft) |
| Actinobacteria (Arthrobacter chlorophenolicus A6 and Micrococcus luteus) Why? |
Jansson | Swedish Univ. of Agricultural Sciences | In finishing (at PGF) | A.c. released 1/14/2008 (draft) , M.l. released 3/5/2008 |
| Beggiatoa alba Why? |
Mueller | Morgan State Univ. | Pending | |
| Burkholderia (B. ambifaria IOP40-10, B. ambifaria MEX-5, B. graminis C4D1M, B. sp. SEMIA 6167, B. sp. strain 131, B. sp. strain H160, B. sp. strain 144F, Burkholderia UFLA 4-5-1 (Amazon strain), ) Why? |
Tiedje | Michigan State Univ. | H160 in assembly, IOP40-10 and MEX-5 done (draft), B.g. in finishing, others pending | IOP40-10 released 3/5/2008, MEX-5 released 3/5/2008, B. g. released 3/5/2008 |
| Anaerobic benzene-degrading methanogenic consortium (Chloroflexi, Desulfobacterium sp., Desulfosporosinus sp., Methanomicrobiales-like sp., Methanosaeta sp., Methanosarcinales-like spp) Why? |
Edwards | Univ. of Toronto | Pending | |
| Crenothrix polyspora enrichment Why? |
Wagner | Univ. of Vienna | In production | |
| Cyanothece strains Why? |
Pakrasi | Washington Univ. | 1 pending, 5 in finishing | PCC 7424 released 2/25/2008 (draft), PCC 8801 released 2/25/2008 (draft) |
| Dechlorinating community (KB-1) (Dehalococcoides, Geobacter, Methanosarcina, Spirochete, Sporomusa) Why? |
Edwards | Univ. of Toronto | 1 in production, 5 pending | |
| Lithifying mat communities of marine stromatolites (Desulfovibrio sp. H0407_12.1Lac, Schizothrix gebeleni sp.A and sp. B, Solentia sp., Sulfate Reducing Bacterium sp. B, and sulfur-oxidizing bacteria) Why? |
Decho | Univ. of South Carolina | Pending | |
| Candidatus Endomicrobium trichonymphae, Elusimicrobium minutum Pei191 Why? |
Brune | Max Planck Institute for Terrestrial Microbiology | In finishing (at PGF) | E.m. 12/3/2007 (draft) |
| Symbiont from the basal clade of the Frankiaceae Why? |
Benson | Univ. of Connecticut | Pending | |
| Six freshwater iron-oxidizing bacteria (Gallionella ferruginea capsiferriformans TW-2 and ES-2, Leptothrix cholodnii SP-6, Rhodobacter sp. str. SW2, Rhodopseudomonas palustris TIE-1, and Sideroxydans lithotrophicus) Why? |
Emerson | Amer. Type Culture Collection | G.f. TW-2 pending; SW2, S.l., and G.f. ES-2 in production, R.p. in finishing (at LLNL); L.c. finished | L.c. released 4/21/2008 , R.p. released 1/30/2008 (draft) |
| Microbiome resident in the foregut of the tammar wallaby (Macropus eugenii) Why? |
McSweeney | CSIRO | In production | |
| Methanomicrococcus blatticola Why? |
Hackstein | Radboud Univ. Nijmegen | Pending | |
| Methylocella silvestris BL2, Methylocapsa acidiphila B2, and Beijerinckia indica subsp. indica Why? |
Dunfield | Inst. of Geological and Nuclear Sciences, New Zealand | B.i. finished, M.s. in finishing, M.a. pending | M.s. released 3/5/2008 , B.i. released 4/14/2008 |
| Pedomicrobium manganicum Why? |
Mackenzie, | Univ. of Texas, Houston | Pending | |
| Microbial community (plasmid mobilome) in wastewater treatment plant Why? |
van der Meer | Univ. of Lausanne | In assembly | |
| Rhizobium leguminosarum bv trifolii (strains WSM1325 and WSM2304) Why? |
Reeve | Murdoch Univ. | In finishing (at LLNL) | WSM1325 released 1/30/2008 (draft), WSM2304 released 2/25/2008 (draft) |
| Near-shore anoxic basin: Saanich Inlet Why? |
Hallam | Univ. of British Columbia | In assembly | |
| Thauera sp. MZ1T Why? |
Sayler | Univ. of Tennessee | In finishing (at LANL) | Released 1/23/2008 (draft) |
| Thermolithobacter ferrireducens Why? |
Wiegel | Univ. of Georgia | Pending | |
| Haloalkaliphilic sulfur-oxidizing bacteria (Thioalkalivibrio sp. HL-EbGR7, and T. sp. K90 mix) Why? |
Muyzer | Delft Univ. of Technology | In production | |
Community Sequencing Program FY2006
| Organism | Proposer | Affiliation | Status* | Public Release** |
|---|---|---|---|---|
| Large Eukaryotes | ||||
| Arabidopsis lyrata and Capsella
rubella (pink shepherd's-purse) Why? |
Weigel | Max Planck Inst. for Developmental Biology | C.r. in production, A.l. in assembly | |
| Mimulus guttatus (monkey flower) Why? |
Willis | Duke Univ. | In production | |
| Sorghum bicolor Why? |
Paterson | Univ. of Georgia | Done (draft) | Released |
| Small Eukaryotes | ||||
| Batrachochytrium dendrobatidis (frog-infecting chytrid fungus ) Why? |
Taylor | UC Berkeley | In finishing | Released (draft) |
| Bicyclus anynana (a butterfly) Why? |
Long | UC Irvine | In production | |
| Campanulales (Grammathotheca bergiana, Isotoma petraea, Lobelia anceps, L. angolenis, L. baumannii, L. cardinalis, L. erinus, L. gregoriana, L. inflata, L. malowensis, L. linearis chloroplast, L. patula, L. siphilitica, L. spicata, L. boninensis, L. morogoroensis chloroplast L. holstii chloroplast, Monopsis alba, M. debilis, M. flava, M. stellaroides, Pratia angulata, P. nummularia, Wimmerella hederacea chloroplast, Carpodetus serratus Chloroplast, Cyphia volubilis chloroplast, Cyphia dentariifolia chloroplast, Cyphia angustiloba, Cyphia tortilis chloroplast, Cyphia phyteuma chloroplast, Cyphia belfastica chloroplast, Brighamia insignis chloroplast, Porterella carnosula, Cyanea fissa chloroplast) Why? |
Knox | Indiana Univ. | P.a., P.n., C.b., L.l., P.c., C.f. pending; M. alba, M. flava, L.s., L.h., L.g., L.m., L.p., C.s., L. m., L. h., C. V., C. d., C.a., C.t., C.p., in production; others in assembly | |
| Ciona intestinalis (sea squirt) Why? |
Lemaire | CNRS, France | Done (draft) | |
| Hydractinia symbiolongicarpus Why? |
Buss | Yale Univ | Pending | |
| Ictalurus punctatus and I. Furcatus (catfish) Why? |
Liu-J | Auburn Univ. | I.p. in production, I.f. done (draft) | |
| Melampsora larici-populina (poplar rust) Why? |
Martin | Institut National de la Recherche Agronomique | Done (draft) | |
| Lake Malawi cichlid fish (Metriaclima zebra, Labeotropheus fuelleborni, Melanochromis auratus, Copadichromis conophorus, Rhamphochromis esox) Why? |
Kocher | Univ. of New Hampshire | Done (draft) | |
| Mycosphaerella fijiensis (cause of black Sigatoka ) Why? |
Goodwin | USDA-ARS, Purdue Univ | Done (draft) | Released (draft) |
| Mytilus californianus (California mussel) Why? |
Gracey | Stanford Univ. | At Stanford | |
| Ostreococcus (green unicellular alga, low-light strain) Why? |
Palenik | UC San Diego | In finishing (Stanford) | |
| Parhyale hawaiensis and Jassa slatteryi (amphipod crustaceans) Why? |
Patel | UC Berkeley | J.s. done (draft), P.h. pending | |
| Petrolisthes cinctipes (porcelain crab) Why? |
Stillman | San Francisco State Univ. | Done (draft) | |
| Phycomyces blakesleeanus Why? |
Corrochano | Univ. of Seville | In finishing at Stanford | Released (draft) |
| Phytophthora capsici (root and crown rot) Why? |
Kingsmore | Natl. Ctr. for Genome Resources | Done (draft) | |
| Piromyces sp. E2 (a chytrid fungus) Why? |
Baker, S | Pacific Northwest Natl. Lab. | In production | |
| Trichoderma virens Why? |
Ebbole | Texas A&M Univ. | In finishing (LANL) | Released (draft) |
| Triphysaria versicolor (a parasitic wildflower) Why? |
Yoder | UC Davis | Done (draft) | |
| Xanthoria parietina (a lichen fungus) Why? |
Crittendon | Univ. of Nottingham | pending | |
| Bacteria and Archaea | ||||
| Acidovorax avenae subsp. Citrulli AAC00-1, Acidovorax JS42, Thermotoga RQ2, and Acidovorax symbiont (Verminephrobacter eiseniae EF01-2) Why? |
Stahl | Univ. of Washington | Finished | A.a. Citrulli, 1/22/2007; A. JS42, 1/22/2007 ; V. eiseniae, 1/22/2007 ; T. RQ2, 3/31/2008 |
| Verrucomicrobia (Akkermansia muciniphila, Chthoniobacter flavus Ellin428, bacterium Ellin 514, Opitutus terrae, and Victivallis vadensis ATCC BAA-548) Why? |
Smidt | Wageningen Univ. | C.f. Ellin428 in finishing; A.m., V.v. in finishing (LLNL); bacterium Ellin514 and O.t. finished | V.v. relased 6/18/2007 (draft) ; A.m. released 1/23/2008 (draft); C.f. Ellin514 3/24/2008 (draft), O.t. released 4/14/2008 |
| Alaskan soil microbial community Why? |
Handelsman | Univ. of Wisconsin- Madison | Done (draft) | |
| Antarctic marine bacterioplankton Why? |
Murray | Desert Research Inst. | Winter done (draft), summer pendiing | |
| Bacillus coagulans 36D1 Why? |
Shanmugam | Univ. of Florida | In finishing (LLNL) | 1/31/2007 (draft) |
| Bifidobacterium longum infantis | Mills | Univ. of California, Davis | In finishing (PGF) | |
| Two caulobacter (Caulobacter sp. K31 and Maricaulis maris MCS10) Why? |
Stephens | Santa Clara Univ. | Finished | M. maris, 9/20/2006 ; sp. K31, 2/27/2008 |
| Crenarchaeote community (phylotype C1b.A1) Why? |
Simon | Oregon Health & Science Univ. | Pending | |
| Euryarchaeota community Why? |
Baker, B | UC Berkeley | In assembly | |
| Six archaea (Halorubrum lacusprofundi ATCC 49239, Methanocorpusculum labreanum Z, Methanoculleus marisnigri JR1, Staphylothermus marinus F1, and Thermofilum pendens Why? |
Woese/ Anderson | Univ. of Illinois at Urbana- Champaign | H.l. in finishing at LANL; S.m., M.l., T. p. and M.m. finished | M.m., 2/28/2007 ; T.p., 1/8/2007, M.l., 2/26/2007 , S.m., 2/28/2007, H.l., 6/25/2007 |
| Thermotogales (hyperthermophiles including Fervidobacterium nodosum Rt17-B1, Petrotoga mobilis SJ95, Thermosipho melanesiensis BI429, Thermotoga lettingae TMO, Thermotoga naphthophila, and Thermotoga petrophila RKU-1) Why? |
Noll | Univ. of Connecticut | T.n. in production, F.n., T. m., T.l., P.m., and T.p. finished | F.n., 8/8/2007; T.p., 5/23/2007; T.m., 6/27/2007; P.m., 11/28/2007; T.l., 9/19/2007 |
| Hypersaline microbial mats Why? |
Pace | Univ. of Colorado | Done (draft) | |
| Korarchaeota community (Candidatus Korarchaeum cryptofilum OPF8, two others) Why? |
Stetter/ Elkins | Univ. Regensberg, Diversa Corp. | 2 done (draft), 1 finished | K.c. OPF8 4/2/2008 |
| Nitrosomonas (isolate IS-79 and oligotropha Nm45) Why? |
Norton | Utah State Univ. | Pending | |
| Polynucleobacter necessarius STIR1 and Polynucleobacter sp. QWL-P1DMWA-1 pol_q Why? |
Hahn | Instit. for Limnology, Austria | Finished | P.n. released 4/21/2008, pol_q released 4/19/2007 |
| Salinispora tropica CNB-440 and S. arenicola CNS205 (marine actinomycetes) Why? |
Jensen | Scripps Inst., UC San Diego | Finished | S.t., 4/19/2007; S.a., 10/10/2007 |
| Sinorhizobium medicae WSM 419 Why? |
Reeve | Murdoch Univ. | Finished | 7/11/2007 |
| Termite gut microbial community Why? |
Leadbetter | Caltech | Done (draft) | |
| Terephthalate (TA) degrading community Why? |
Liu/ Hugenholtz | Natl. Univ. of Singapore | Done (draft) | |
| Hyperthermophilic Archaeal Species (Thermoproteus neutrophilus V24Sta , Pyrobaculum aresenaticum DSM 13514, P. calidifontis, P. islandicum, Caldivirga maquilingensis IC-167) Why? |
Lowe | UC Santa Cruz | T.n., C.m, P.a., P.i., and P.c. finished | P.i., 1/8/2007 ; C.m., 10/10/2007; P.c., 3/21/2007; P.a., 4/23/2007 ; T.n., 4/21/2008 |
| Opitutaceae bacterium TAV2 (ex. Verrucomicrobium sp. TAV2) Why? |
Schmidt/ Rodrigues | Michigan State Univ. | In finishing (LLNL) | 6/25/2007 (draft) |
Community Sequencing Program FY2005
| Organism | Proposer | Affiliation | Status* | Public Release** |
|---|---|---|---|---|
| Microbes | ||||
| Olavius algarvensis symbionts Why? |
Dubilier | Max Planck Institute of Marine Microbiology | In production | |
| Crenarchaeota Why? |
Delong | MIT | In production | |
| Marinobacter aquaeolei VT8 Why? |
Edwards | Woods Hole Oceanographic Institution | Finished | 1/3/2007 |
| Staphylococcus aureus subsp.
aureus JH1 and JH9 Why? |
Tomasz | Rockefeller University | Finished | JH1 7/11/2007 JH9 5/23/2007 |
| Prochlorococcus ACM A12II Why? |
Chisholm | MIT | Done (draft) | |
| Rhodocyclus-like polyphosphate accum. Why? |
Hugenholtz | JGI | In draft assembly | |
| Rhodobacter sphaeroides ATCC17025 and ATCC17029 Why? |
Kaplan | University of Texas, Houston | Finished | ATCC 17025, 5/9/2007; ATCC 17029, 3/19/2007 |
| Contaminated groundwater Why? |
Zhou | ORNL | Done (draft) | |
| Lactobacillus
reuteri strains 100-23 and F275 Why? |
Tannock | University of Otago, Dunedin, NZ | F275 finished, 100-23 in finishing (PGF) | 100-23,
4/3/2006 (draft) and F275, 6/6/2007 |
| Ignicoccus hospitalis KIN4/I | Podar | Diversa | Finished | 9/17/2007 |
| Bacillus cereus
subsp. cytotoxis NVH 391-98 and Bacillus weihenstephanensis KBAB4 Why? |
Sorokin | INRA, France | Finished | NVH 391-98, 7/18/2007; KBAB4, 1/14/2008 |
| Basal Organisms | ||||
| Selaginella moellendorffii Why? |
Banks | Purdue University | In finishing | Released (draft) |
| Trichoplax Why? |
DellaPorta | Yale University | In finishing | Released (draft) |
| Sporobolomyces roseus Why? |
Wolfe | Trinity College, Dublin | Done (draft) | Released (draft) |
| Reniera Why? |
Degnan | University of Queensland, Australia | In assembly | Reads released |
| Mycosphaerella graminicola Why? |
Goodwin | Purdue University | Finished | Released (draft) |
| Spironucleus vortens and Naegleria gruberi Why? |
Cande | UC Berkeley | S. vortens in assembly, N.g. in finishing | N. gruberi released (draft) |
| Higher Animals and Plants | ||||
| Physcomitrella patens Why? |
Mishler | UC Berkeley | Done (draft) | Released (draft) |
| Lottia gigantea (limpet) Why? |
Edsinger-Gonzalez, Rokhsar, Lindberg | UC Berkeley, JGI | Done (draft) | Released |
| Helobdella robusta (leech) Why? |
Weisblat | UC Berkeley | Done (draft) | Released (draft) |
| Capitella sp. I Why? |
Seaver | University of Hawaii | Done (draft) | Released (draft) |
| ESTs and Targeted Sequencing | ||||
| Alvinella pompejana Why? |
Tainer | Scripps Research Institute | Done (draft) | |
| Seed plant mitochondria (Amborella trichopoda, Citrullus lanatus watermelon, Cucumis melo (melon), Cucumis melo Iroquois, C. sativus, Cucurbita pepo zucchini, Digitalis purpurea, Liriodendron tulipifera, Plantago lanceolata, Pelargonium hortorum, Plantago media, Cucumis metulliferus, Vigna radiata) Why? |
Palmer | Indiana University, Bloomington | C.s., C. metulliferus, V.r. in production; D.p., C.m.I., A.t., C.l., C.p., L.p., P.l., P.h., P.m. done (draft) | |
| Karenia brevis Why? |
Bhattacharya | University of Iowa | Finished | |
| Dipteran fosmids Why? |
Eisen | LBNL | In production | |
Laboratory Science Program Small-Scale Sequencing FY2008
| Organism | Proposer | Affiliation | Status* | Public Release** |
|---|---|---|---|---|
| Avena Barbata ESTs | Anderson | BNL | In production | |
| Burkholderia cepacia Bu72 | van der Lelie | BNL | In production | |
| Fungal comparative genomics (Orpinomyces) | Baker | PNNL | Pending | |
| Leonotis nepetifolia | Shanklin | BNL | Pending | |
| Phycomyces blakesleeanus | Baker | PNNL | Pending | |
| Poplar in Response to Dehydration | Yang | ORNL | In production | |
| Hypersaline microbial mat | Raymond | LLNL | In production | |
| Medaka Fish | Glenn | SRNL | Pending | |
| Nuclear matrix attachment regions (MARs) | Doggett | LANL | 2 pending, 1 in production | |
| 454 Sequencing of Viruses | Han | LANL | Pending | |
| Peromyscus | Glenn | SRNL | In production | |
| Prunus persica | Rokhsar | LBNL | In production | |
| Yellowstone Archaeal Virus Community (Nymph Lake and Crater Hills) | Roberto | INL | In production | |
| Microcoleus vaginatus FGP-2 | Kuske | LANL | In production | |
| Grass-feeding termite hindgut communities | Hugenholtz | LBNL | In production | |
| Etolico Lagoon in Greece | Kyrpides | LBNL | In production |
Laboratory Science Program Small-Scale Sequencing FY2007
| Organism | Proposer | Affiliation | Status* | Public Release** | Amount Proposed (Mb) |
|---|---|---|---|---|---|
| Five Archaea (Methanohalobium evestigatum, Methanobacterium formicicum, Halococcoides, Ferroglobus placidus, and Acidianus sp. JP7) | Kyrpides | LBNL | Acidianus in production, others pending | 50 | |
| Aspergillus terreus EST | Baker | PNNL | In production | 10.0 | |
| ChIP-enriched binding sequences | Stubbs | LLNL | In production | 33.0 | |
| CRISPR loci of Leptospirillum | Banfield | In production | |||
| Cochliobolus heterostrophus | Turgeon | Cornell University | In finishing | 336.0 | |
| Columbia River Microbiota | Magnuson | PNNL | Pending | 5.0 | |
| Low Dose DiTags | Anderson | BNL | Done (draft) | 180.0 | |
| Microbial community actively decaying poplar biomass | van der Lelie | BNL | In production | 200 | |
| Microbial diversity in tropical and temperate forests | Pett-Ridge | LLNL | 12 Finished | 10.8 | |
| New Orleans Floodwaters | Andersen | LBNL | Done (draft) | 10.0 | |
| Soluble protein domains | Terwilliger | LANL | Pending | 6.5 | |
| Tallgrass Prairie soil | Bailey | PNNL | Finished | 10.0 | |
| Thielavia terrestris | Berka | Novozymes | In production | 294.0 | |
| Tremella mesenterica | Heitman | Duke University | In production | 168.0 | |
| Viruses in nasopharyngeal swab samples from healthy subjects | Mariella | LLNL | In production | 10 |
DOE Microbial Genome Program FY2007
| Organism(s) | Status* | Public Release** | Est. Genome Size |
|---|---|---|---|
| Acremonium alcalophilum ATCC90507 | In production | 40 MB |
|
| Azolla Cyanobacterium, Arthrospira maxima, and Cyanobacterium JSC-1 | A.m. in assembly, JSC-1 in production, Azolla pending | NA | |
| bacterioplankton pool cDNA day, night, night + DOC1, night + DOC2 | night + DOC2 in production,others pending | NA |
|
| Clostridum carboxidivorans, Clostridium sp. strains, Clostridium straminisolvens, Clostridum thermocellum LQR1 DSM2360 , Clostridium thermocellum JW20 DSM 4150 Thermoanaerobacter italicus Ab9 DSM9252, T. ethanolicus X513, T. ethanoloicus X561, T. mathrani, Thermoanaerobacterium thermosaccharaolyticum, Thermoanaerobacterium xylanolyticum LX11 DSM7097 |
8 pending, 11 in production, 2 in finishing | 3.5-4.0 MB | |
| Cyanobiont in Azolla | In production | NA | |
| Elephant Grass Decomposer Community | Pending | NA |
|
| Exiguobacterium sp. AT1b | In finishing (at LANL) | NA | |
| Flavobacteria sp. MS024-2A, Flavobacteria sp. MS0243-3C, Flavobacteria sp. strains | Strain 3 in finishing (at LANL), strain 4 in assembly, others pending | NA | |
| Geobacillus sp. G11MC16, sp. WCH70, sp. Y412MC10 | In finishing (at LANL) | WCH70 3/24/2008 (draft) | 6.4 MB |
| Gluconacetobacter diazotrophicus 448, G.d. PAL 5 | PAL 5 in production, 448 pending | NA | |
| Gut consortium of Anoplophora glabripennis | In production | NA |
|
| Kosmotoga olearia TB 19.5.1 | In assembly | NA | |
| Lactobacillus buchneri B-30929 and NRRL B30929 | B-30929 in finishing, NRRL B30929 done (draft) | NA | |
| Lost City Methanosarcinales | In assembly | 3 MB |
|
| Methanosphaerula palustris E1-9c | In production | NA | |
| Mucor circinelloides CBS277.49 | In finishing | 36.05 MB |
|
| Paenibacillus sp. JDR-2 | In finishing | 2/25/2008 | NA |
| Pelotomaculum schinkii strain HH | In production | 3 MB |
|
| Phanerochaete carnosa | In production | 35 MB |
|
| Rhodosporidium babjevae WP1 | In production | 20 MB |
|
| Serpula lacrymans | In production | 25 MB |
|
| Sporotrichum thermophile ATCC42464 | Pending | 43 MB |
|
| Thermoacetogenium phaeum | In production | ||
| Tipula abdominalis gut | In production | NA |
|
| Tropical picophytoeukaryotes site 1, site 2, site 3 | 2 in production, 1 pending | NA |
|
| Vibrio furnissii | Pending | NA |
DOE Microbial Genome Program FY2006
| Organism(s) | Status* | Public Release** | Est. Genome Size |
|---|---|---|---|
| Anaeromyxobacter dehalogenans strain 2CP-1 | In finishing (at LANL) | 1/30/2008 (draft) | 5 MB |
| Acidithiobacillus ferrooxidans ATCC 53993 | In finishing | ||
| Anaeromyxobacter sp. Fw109-5 | Finished | 7/18/2007 | 5 MB |
| Anaeromyxobacter sp. K | In finishing (at LANL) | 9/12/2007 (draft) | 5 MB |
| Bison Pool, hydrothermal ecosystem | Done (draft) | NA | |
| Burkholderia ambifaria MC40-6 | Finished | 4/7/2008 | 7.4 MB |
| Burkholderia cenocepacia MC0-3 | Finished | 3/17/2008 | 7.9 MB |
| Burkholderia multivorans ATCC 17616 | Finished | 11/26/2007 | 6.8 MB |
| Burkholderia phymatum STM815 | Finished | 4/23/2008 | 8.9 MB |
| Burkholderia phytofirmans PsJN | In finishing (at LLNL) | 11/13/2006 (draft) | 8 MB |
| Chlorella sp. NC64A | Done (draft) | 40 MB | |
| Chlorella vulgaris C-169 | Done (draft) | 40 MB | |
| Clostridium cellulolyticum H10 | In finishing (at LANL) | 11/27/2006 (draft) | 5 MB |
| Comamonas testosteroni KF-1 | In finishing (at PGF) | 11/13/2006 (draft) | 6 MB |
| Dehalococcoides sp. Strain GT | Pending | 1.5 MB | |
| Delftia acidovorans SPH-1 | Finished | 11/26/2007 | 6 MB |
| Desulfatibacillum alkenivorans AK-01 | Done (draft) | 10/31/2007 (draft) | 6 MB |
| Desulfococcus oleovorans Hxd3 | Finished | 11/7/2007 | 6 MB |
| Dictyostelium purpureum | Done (draft) | 34 MB | |
| Dinoroseobacter shibae DFL-12 | Finished | 10/10/2007 | 6 MB |
| Dunaliella salina UTEX | In production | 130 MB | |
| Enterobacter sp. 638 , | Finished | 4/19/2007 | 5 MB |
| Escherichia coli C str. ATCC 8739 | Finished | 3/17/2008 | 4 MB |
| Geobacter Lovleyi SZ | In finishing (LANL) | 11/27/2006 (draft) | 4 MB |
| Leptospirillum ferroxidans Markosian | In finishing (LANL) | 2.5 MB | |
| Marinomonas sp. strain MWYL1 | Finished | 7/11/2007 | 5 MB |
| Metallosphaera sedula DSM 5348 | Finished | 5/7/2007 | 1.89 MB |
| Methanococcus aeolicus Nankai-3 | Finished | 7/9/2007 | 2 MB |
| Methanococcus maripaludis C5 | Finished | 3/19/2007 | 2 MB |
| Methanococcus maripaludis C6 | Finished | 11/15/2007 | 2 MB |
| Methanococcus maripaludis C7 | Finished | 7/9/2007 | 2 MB |
| Methanococcus vannielii SB | Finished | 7/9/2007 | 2 MB |
| Methanococcus voltae A3 | In finishing (PGF) | 10/31/2007 (draft) | 2 MB |
| Methanoregula boonei 6A8 | Finished | 8/13/2007 | 3 MB |
| Methylobacterium chloromethanicum CM4 | In finishing (LANL) | 8/13/2007 | 7 MB |
| Methylobacterium extorquens PA1 | Finished | 1/14/2008 | 7 MB |
| Methylobacterium nodulans ORS 2060 | In finishing | 11/19/2007 (draft) | 7 MB |
| Methylobacterium populi BJ001 | Finished | 4/14/2008 | 7 MB |
| Methylobacterium radiotolerans JCM 2831 | Finished | 3/31/2008 | 7 MB |
| Methylobacterium sp. 4-46 | Finished | 2/27/2008 | 7 MB |
| Methylotroph strain L1N13 | Pending | 10 MB | |
| Nitrosopumilus maritimus SCM1 | Finished | 11/28/2007 | 3 MB |
| Parvibaculum lavamentivorans DS-1 | Finished | 8/8/2007 | 6 MB |
| Plasmids in prokaryotes | 9 done (draft), 6 In finishing (at PGF), 6 finished 38 in production | 7 MB | |
| Poplar endophytic bacteria (Pseudomonas putida strain W619, Serratia proteamaculans 568, Stenotrophomonas maltophilia R551-3) | S.m. in finishing (LLNL), P.p. and S.p. finished, | P.p. released 3/17/2008, S.p. released 9/19/2007 , S.m. released 12/20/2006 (draft) | 37.3 MB |
| Prochlorococcus, its phages, and the surrounding microbial community at the Hawaii Ocean Times Series Station (HOT) | 4 pending, 19 in production, 3 finished, 1 in assembly | 2 GB | |
| Pseudomonas mendocina strain ymp | Finished | 5/9/2007 | 4.6 MB |
| Pseudomonas putida strain GB-1 | Finished | 2/13/2008 | 6 MB |
| Pseudo-nitzschia (diatom) | In production | 250 MB | |
| Ralstonia pickettii 12D | In finishing (at LLNL) | 6/18/2007 (draft) | 3 MB |
| Ralstonia pickettii 12J | In finishing (LANL) | 1/17/2007 (draft) | 3.5 MB |
| Rice endophyte metagenome | In production | 100 MB | |
| Schizophyllum commune | In production | 38 MB | |
| Shewanella halifaxensis HAW-EB4 | Finished | 2/27/2008 | 5 MB |
| Shewanella pealeana ATCC 700345 | Finished | 10/10/2007 | 5 MB |
| Shewanella sediminis HAW-EB3 | Finished | 9/19/2007 | 5 MB |
| Shewanella woodyi ATCC 51908 | Finished | 3/17/2008 | 5 MB |
| Sphingomonas wittichii Strain RW1 | Finished | 6/6/2007 | 5 MB |
| Sulfolobus islandicus strains (eight) | 7 in finishing (LANL), 1 done (draft) | M.16.4, 10/31/2007 (draft); U.3.28, 10/31/2007 (draft); L.D.8.5, 11/5/2007; Y.G.57.14, 11/5/2007; Y.N.15.51, 11/5/2007 | 24 MB |
| Thermosinus carboxydivorans Nor1 | In finishing (LANL) | 1/17/2007 (draft) | 3 MB |
| Trichoderma actroviride | In finishing (LANL) | 40 MB |
DOE Microbial Genome Program FY2005
Strains of Shewanella
| Organism | Status* | Public Release** | Est. Genome Size |
|---|---|---|---|
| Shewanella baltica OS195 | Finished | 11/30/2007 | 5 Mb |
| Shewanella sp. ANA-3 | Finished | 11/2/2005 | 5 Mb |
| Shewanella sp. MR-4 | Finished | 9/13/2006 | 5 Mb |
| Shewanella sp. MR-7 | Finished | 9/13/2006 | 5 Mb |
| Shewanella sp. W3-18-1 | Finished | 1/8/2007 | 5 Mb |
| Shewanella baltica OS223 | In finishing (LANL) | 5/2/2007 (draft) | 5 Mb |
Strains of Chloroflexi
| Organism | Status* | Public Release** | Est. Genome Size |
|---|---|---|---|
| Chloroflexus aggregans DSM 9485 | In finishing (PGF) | 11/13/2006 (draft) | 5 Mb |
| Chloroflexus sp. Y-396-1 | In production | 5 Mb | |
| Chlorothrix halophila (Candidatus) | Done (draft) | 5 Mb | |
| Herpetosiphon aurantiacus DSM 785 | Finished | 11/14/2007 | 5 Mb |
| Roseiflexus castenholzii HLO8 | Finished | 9/17/2007 | 5 Mb |
| Roseiflexus sp. strain RS-1 | Finished | 6/6/2007 | 5 Mb |
Strains of Rhodopseudomonas palustris
| Organism | Status* | Public Release** | Est. Genome Size |
|---|---|---|---|
| R. palustris BisA53 | Finished | 10/4/2006 | 5.5 Mb |
| R. palustris BisB5 | Finished | 4/12/2006 | 4.9 Mb |
| R. palustris BisB18 | Finished | 3/22/2006 | 5.5 Mb |
| R. palustris HaA2 | Finished | 8/24/2005 | 5.5 Mb |
Organisms Involved in Microbial Arsenic Transformation
| Organism | Status* | Public Release** | Est. Genome Size |
|---|---|---|---|
| Bacillus selenitireducens MLS-10 | In finishing (LANL) | 11/5/2007 (draft) | 2-4 Mb |
| Mono Lake Deltaproteobacter MLMS-1 | Pending | 3/13/2006 (draft) | 6.06 Mb |
| Alkaliphilus oremlandii OhILAs | Finished | 10/17/2007 | 2-4 Mb |
| Alkalilimnicola ehrlichei MLHE-1 | Finished | 9/13/2006 | 2-4 Mb |
Two species of Micromonas pusilla
| Organism | Status* | Public Release** | Est. Genome Size |
|---|---|---|---|
| M. pusilla NOUM17(RCC 299) | Finished | Released | 15 Mb |
| M. pusilla CCMP1545 | In finishing | Released (draft) | 15 Mb |
Single microbes
| Organism | Status* | Public Release** | Est. Genome Size |
|---|---|---|---|
| Acidiphilium cryptum JF-5 | Finished | 5/14/2007 | 2.46 Mb |
| Acidobacteria bacterium Ellin 345 | Finished | 5/8/2006 | 3 Mb |
| Acidothermus cellulolyticus 11B | Finished | 11/20/2006 | 6 Mb |
| Actinobacillus succinogenes 130Z | Finished | 7/11/2007 | 2 Mb |
| Aspergillus niger | Finished | Released | 32 Mb |
| Aureococcus anophagefferens | In finishing | Released | 32 Mb |
| Bradyrhizobium sp. BTAi1 | Finished | 5/14/2007 | 9.2 Mb |
| Burkholderia cepacia AMMD | Finished | 10/4/2006 | 7.2 Mb |
| Caldicellulosiruptor saccharolyticus DSM 8903 | Finished | 5/7/2007 | 4.3 Mb |
| Candidatus Ruthia magnifica Cm (Proteobacterial symbiont of the clam Calyptogena magnifica) | Finished | 12/13/2006 | 4 Mb |
| Dehalococcoides sp. BAV1 | Finished | 5/7/2007 | 2 Mb |
| Dehalococcoides sp. VS | Done (draft) | 9/12/2007 | 1.5 Mb |
| Desulfotomaculum reducens MI-1 | Finished | 4/4/2007 | 4 Mb |
| Flavobacterium johnsoniae UW101 | Finished | 5/7/2007 | 6.07 Mb |
| Geobacter sp. FRC-32 | In finishing (LLNL) | 7/10/2006 (draft) | 5 Mb |
| Halorhodospira halophila SL1 | Finished | 1/22/2007 | 4 Mb |
| Methanosaeta thermophila PT | Finished | 11/6/2006 | 3 Mb |
| Mycobacterium gilvum PYR-GCK | Finished | 4/19/2007 | 5 Mb |
| Mycobacterium vanbaalenii PYR-1 | Finished | 1/3/2007 | 6.46 Mb |
| Nectria haematococca MPVI | Finished | Released | 40 Mb |
| Polaromonas naphthalenivorans CJ2 | Finished | 1/22/2007 | 6 Mb |
| Postia Placenta | Finished | Released | 40 Mb |
| Pseudoalteromonas atlantica T6c | Finished | 6/28/2006 | 3.5 Mb |
| Pseudomonas putida F1 | Finished | 6/6/2007 | 6.2 Mb |
| Psychromonas ingrahamii | Finished | 1/8/2007 | 4 Mb |
| Xanthobacter autotrophicus Py2 | Finished | 8/8/2007 | 5 Mb |
Communities
| Organism | Status* | Public Release** |
|---|---|---|
| Microbial Population from The Cedars (California) | Pending | |
| Acid mine drainage community (Iron Mountain, California) | Finished | |
| Obsidian Hot Spring (Yellowstone: Acyclobacillus sp., Dictyoglomus turgidum, Geobacillus sp Y412MC61, Geobacillus sp. Y412MC52, Hydrogenobaculum strain Y04AAS1, Mixed Community, Sulfolobus solfataricus 98/2, Sulfurihydrogenibium sp. Y03AOP1, Thermareobacter sp. Y412MC57) | Community done (draft), A. sp., G. Y412MC61, G. Y412MC52, S.s., and T. Y412MC57 in production, D.t., H. Y04AAS1 and S. Y03AOP1 in finishing | Sulfurihydrogenibium sp. YO3AOP1 released 2/25/2008 (draft), Hydrogenobaculum Y04AAS1 released 8/13/2007 |
| PAH Degrading Mycobacteria (Mycobacterium sp. MCS, JLS, and KMS | Finished | sp. MCS, 06/ 12/06; sp. JLS, 2/28/2007; sp. KMS, 1/3/2007 |
| Active methylotroph community from Lake Washington | Finished |
DOE Microbial Genome Program FY2004
Chlorobia (avg:~2.4Mb)
| Organism | Status* | Public Release** | Genome Size |
|---|---|---|---|
| Chlorobium ferrooxidans DSM 13031 | In finishing (by collaborator) | 7/10/2006 (draft) | 2.40 Mb |
| Chlorobium limicola DSMZ 245 | In finishing (by collaborator) | 4/8/05 (draft) | 2.4 Mb |
| Chlorobium phaeobacteroides BS1 | In finishing (by collaborator) | 6/1/05 (draft) | 2.4 Mb |
| Chlorobium phaeobacteroides DSM 266 | Finished | 12/13/06 | 2.3 Mb |
| Pelodictyon luteolum DSMZ 273 | Finished | 2/18/05 | 2.3 Mb |
| Pelodictyon phaeoclathratiforme BU-1 (DSM 5477) | In finishing (by collaborator) | 2/24/05 (draft) | 2.4 Mb |
| Prosthecochloris aestuarii DSM 271 | In finishing (by collaborator) | 2/19/05 (draft) | 2.4 Mb |
| Prosthecochloris vibrioformis DSM 265 | Finished | 4/19/07 | 2.4 Mb |
| Chlorobaculum parvum | In finishing | n/a | |
| Chloroherpeton thalassium | In finishing | n/a |
Model Syntrophic Consortium
| Organism | Status* | Public Release ** | Genome Size |
|---|---|---|---|
| Syntrophobacter fumaroxidans MPOB | Finished | 11/6/06 | 3.3 Mb |
| Syntrophomonas wolfei Göttingen (DSM 2245B) | Finished | 9/20/06 | 3 Mb |
| Methanospirillum hungatei JF1 | Finished | 3/1/06 | 3.70 Mb |
Facultative Metal-reducing Gamma proteobacteria
| Organism | Status* | Public Release** | Genome Size |
|---|---|---|---|
| Shewanella amazonensis SB2B | Finished | 1/8/2007 | 4.40 Mb |
| Shewanella baltica OS155 | Finished | 2/28/2007 | 5.20 Mb |
| Shewanella baltica OS185 | Finished | 7/18/2007 | |
| Shewanella denitrificans OS217 | Finished | 4/12/2006 | 4.70 Mb |
| Shewanella frigidimarina NCIMB 400 | Finished | 9/20/2006 | 4.90 Mb |
| Shewanella putrefaciens 200 | In finishing (LLNL) | 1/31/2007 (draft) | 4.5 Mb |
| Shewanella putrefaciens CN-32 | Finished | 5/9/2007 | 4.5 Mb |
| Shewanella loihica PV-4 | Finished | 3/19/2007 | 4.5 Mb |
Five bacteria involved in nitrification
| Organism | Status* | Public Release** | Genome Size |
|---|---|---|---|
| Nitrobacter hamburgensis X14 | Finished | 4/19/06 | 5.011530 Mb |
| Nitrobacter winogradskyi Nb-255 | Finished | 5/13/05 | 3.40 Mb |
| Nitrosococcus oceani ATCC 19707 | Finished | 5/13/05 | 3.5 Mb |
| Nitrosomonas eutropha C71 | Finished | 9/13/06 | 2.70 Mb |
| Nitrosospira multiformis ATCC 25196 | Finished | 1/9/05 | 3.20 Mb |
Single microbes
| Organism | Status* | Public Release** | Genome Size |
|---|---|---|---|
| Alkaliphilus metalliredigenes QYMF | Finished | 7/9/2007 | 4.5 Mb |
| Anaeromyxobacter dehalogenans 2CP-C | Finished | 2/26/05 | 5.20 Mb |
| Arthrobacter sp. FB24 | Finished | 11/6/06 | 5.20 Mb |
| Bath hot springs thermophages Y4.1MC1, Y4.1MC4, and Y5.1MC23 | Y4.1MC4 in assembly, Y4.1MC1 in assembly, Y5.1MC23 in finshing | ||
| Burkholderia cenocepacia AU 1054 | Finished | 6/7/06 | 7.30 Mb |
| Burkholderia cenocepacia HI2424 | Finished | 11/6/06 | 7.70 Mb |
| Chromohalobacter salexigens DSM 3043 | Finished | 4/19/06 | 3.90 Mb |
| Clostridium beijerincki NCIMB 8052 | Finished | 6/27/07 | 7.80 Mb |
| Clostridium phytofermentans ISDg | Finished | 11/26/2007 | 5 Mb |
| Deinococcus geothermalis DSM 11300 | Finished | 10/17/2007 | 3 Mb |
| Frankia sp. CcI3 | Finished | 1/14/05 (draft) | 5.43 Mb |
| Frankia sp. EAN1pec | Finished | 10/17/2007 | 10 Mb |
| Jannaschia sp. CCS1 | Finished | 3/1/06 | 4.5 Mb |
| Nocardioides sp. JS614 | Finished | 1/3/07 | 5.5 Mb |
| Paracoccus denitrificans PD1222 | Finished | 1/3/07 | 3.70 Mb |
| Polaromonas sp. JS666 | Finished | 4/12/06 | 5.20 Mb |
| Prochlorococcus marinus NATL2A | Finished | 4/11/05 | 2 Mb |
| Psychrobacter cryohalolentis K5 | Finished | 4/19/06 | 3.20 Mb |
| Silicibacter sp. TM1040 | Finished | 6/7/06 | 3.20 Mb |
| Solibacter usitatus Ellin6076 | Finished | 10/30/06 | 10.20 Mb |
| Sphingopyxis alaskensis RB2256 | Finished | 6/7/06 | 3.20 Mb |
| Sulfurimonas denitrificans DSM 1251 | Finished | 2/27/05 | 2.20 Mb |
| Synechococcus sp. CC9605 (oligotrophic) | Finished | 2/26/05 | 2.5 Mb |
| Synechococcus sp. CC9902 (coastal) | Finished | 2/26/05 | 2.5 Mb |
| Thermoanaerobacter pseudethanolicus 39E | Finished | 2/13/08 | 3 Mb |
| Thermoanaerobacter sp. X514 | Finished | 2/13/08 | 3 Mb |
| Thermus aquaticus Y51MC23 | In finishing | ||
| Thiobacillus denitrificans ATCC 25259 | Finished | 10/6/04 | 3 Mb |
| Thiomicrospira crunogena XCL-2 | Finished | 5/13/05 | 2.40 Mb |
Eukaryotes
| Organism | Status* | Public Release** | Genome Size |
|---|---|---|---|
| Glomus intraradices | In production | 15 Mb | |
| Laccaria bicolor | In finishing (at Stanford) | Released | 40 Mb |
| Pichia stipitis, CBS 6054 | Finished | Released | 12 Mb |
Communities
| Organism | Status* | Public Release** | Genome Size |
|---|---|---|---|
| 200 BACs from anaerobic bioreactor granules | Finished | ~100 Mb | |
| acid mine drainage community | Done (draft) | ~80 Mb | |
| Picoplankton BACS from HOTS site | In production | ~150 Mb | |
| Boiling thermal pool | In production | ~50 Mb |
DOE Microbial Genome Program FY2003
Eukaryotes
| Organism | Status* | Public Release** | Genome Size |
|---|---|---|---|
| Emiliania huxleyi | Done (draft) | Reads released | 220 Mb |
| Ostreococcus lucimarinus | Finished | Released | 9.3 Mb |
| Monosiga brevicollis | Done (draft) | Released |
Bacteria
| Organism | Status* | Public Release** | Genome Size |
|---|---|---|---|
| Anabaena variabilis ATCC 29413 | Finished | Released | 7 Mb |
| Burkholderia sp. 383 | Finished | Released | 8.80 Mb |
| Burkholderia vietnamiensis G4 | Finished | Released | 8.40 Mb |
| Chlorobium aggregatum | Finished | ||
| Chlorobium chlorochromatii CaD3 | Finished | Released | 2.6 Mb |
| Chlorochromatium aggregatum Lake Dagow | Done (draft) | ||
| Crocosphaera watsonii WH 8501 | Done (draft) | Released (draft) | 6.40 Mb |
| Kineococcus radiotolerans SRS30216 | Finished | 7/18/2007 | 4.90 Mb |
| Methylibium petroleiphilum PM1 | Finished | Released 2/28/2007 | 4.60 Mb |
| Methylobacillus flagellatus KT | Finished | Released | 2.80 Mb |
| Moorella thermoacetica ATCC 39073 | Finished | Released | 2.60 Mb |
| Prochlorococcus marinus str. MIT 9312 | Finished | Released | 2.40 Mb |
| Rubrobacter xylanophilus DSM 9941 | Finished | Released | 3.20 Mb |
| Synechococcus elongatus PCC7942 | Finished | Released | 2.70 Mb |
Communities
| Organism | Status* | Public Release** |
|---|---|---|
| Acid Mine Drainage community | Done (draft) | Released |
DOE Microbial Genome Program FY2002
Eukaryotes
| Organism | Status* | Public Release** | Genome Size |
|---|---|---|---|
| Thalassiosira pseudonana CCMP 1335 (diatom) | In finishing (Stanford) | Released | 32 Mb |
Lactic Acid Bacteria
| Organism | Status* | Public Release** | Genome Size |
|---|---|---|---|
| Bifidobacterium longum DJO10A | Finished | Released (draft) | 2.4 Mb |
| Brevibacterium linens BL2 | Finished | Released (draft) | 4.5 Mb |
| Lactobacillus brevis ATCC 367 | Finished | Released | 1.8 Mb |
| Lactobacillus casei ATCC 334 | Finished | Released | 2.8 Mb |
| Lactobacillus delbrueckii ATCC BAA-365 | Finished | Released | 1.6 Mb |
| Lactobacillus gasseri ATCC 33323 | Finished | Released | 1.9 Mb |
| Lactococcus lactis subsp. cremoris SK11 | Finished | Released | 2.6 Mb |
| Leuconostoc mesenteroides ATCC 8293 | Finished | Released | 2 Mb |
| Oenococcus oeni PSU-1 | Finished | Released | 1.8 Mb |
| Pediococcus pentosaceus ATCC 25745 | Finished | Released | 1.8 Mb |
| Streptococcus thermophilus LMD-9 | Finished | Released | 1.8 Mb |
Single Microbes
| Organism | Status* | Public Release** | Genome Size |
|---|---|---|---|
| Azotobacter vinelandii AvOP | Finished (by collaborator) | Released (draft) | 5.33 Mb |
| Clostridium thermocellum ATCC 27405 | Finished | Released 2/28/2007 | 3.80 Mb |
| Dechloromonas aromatica RCB | Finished | Released | 4.5 Mb |
| Desulfovibrio desulfuricans G20 | Finished | Released | 3.73 Mb |
| Desulfuromonas acetoxidans DSM 684 | Done (draft) | 8/9/2006 | 4.1 Mb |
| Ehrlichia canis Jake | Finished | Released | 1.60 Mb |
| Ehrlichia chaffeensis Sapulpa | In finishing (LLNL) | Released (draft) | 1.80 Mb |
| Exiguobacterium sibiricum 255-15 | Finished | Released 4/7/2008 | 3.10 Mb |
| Geobacter metallireducens GS-15 | Finished | Released | 4.30 Mb |
| Haemophilus somnus 129PT | Finished | Released | 2.00 Mb |