DOE Sequencing Projects
This page is reviewed at the beginning of every month.
| Organism | Status* | Public Release** | Est. Genome Size |
|---|---|---|---|
| Branchiostoma floridae (Florida lancelet) | In finishing (at Stanford) | Released | 600 Mb |
| Chlamydomonas reinhardtii (a green alga) (improve existing genome) Why? |
In finishing (at Stanford) | Released | 100 Mb |
| Ciona (sea squirt) fosmids (improve existing genome) Why? |
Finished | Released | 180 Mb |
| Daphnia pulex (water flea) | Done (draft) | Released | 200 Mb |
| Fugu rubripres (puffer fish) (fosmid) Why? |
Finished | Released | 400 Mb |
| Glycine Max (soybean) Why? |
In finishing | 1115 Mb | |
| Nematostella vectensis (burrowing anemone) | In finishing | Released | 340 Mb |
| Phakopsora pachyrhizi (soybean rust pathogen) | Done (draft) | Reads released | 50 Mb |
| Phytophthora sojae (soybean blight pathogen) Why? |
Done | Released | 62 Mb |
| Phytophthora ramorum (sudden oak death pathogen) Why? |
Done | Released | 60 Mb |
| Phaeodactylum tricornutum (a diatom) | Finished | Released | 30 Mb |
| Phanerochaete chrysosporium (white rot fungus) Why? |
Done | Released | 30 Mb |
| Populus trichocarpa (black cottonwood) Why? |
In finishing (at Stanford) | Released | 550 Mb |
| Trichoderma reesei (a filamentous fungus) Why? |
Done (draft) | Released (draft) | 30 Mb |
| Xenopus tropicalis (western clawed frog) (improve existing genome to ~7.5x) Why? |
Finished | Released | 1.7 Gb |
| Zea mays (corn) | In production | Reads released | 2.2 Gb |
*"Pending" indicates that we are waiting for DNA or the DNA is waiting to enter the production process; "in production" includes both library creation and production sequencing; "draft assembly" is the first assembly, made without finishing the genome; "finishing" is postproduction work not carried out for all organisms; "final assembly" is the process of assembling the finished genome; "annotation" refers to automated finding of genes and assignment of functions; genomes on which we do not plan further work are labeled "done".
**"Reads released" indicates that reads have been sent to the GenBank Trace Archive; release dates indicate the date an assembly was made publicly available.
