Sequencing

Sequencing Strategy Sequencing Plans and Progress Statistics Why Sequence Them? Information for Collaborators Protocols Community Sequencing Program Genome Portal Site

DOE Sequencing Projects

This page is reviewed at the beginning of every month.

Organism Status* Public Release** Est. Genome Size
Branchiostoma floridae (Florida lancelet) In finishing (at Stanford) Released 600 Mb
Chlamydomonas reinhardtii (a green alga) (improve existing genome)
Why?
In finishing (at Stanford) Released 100 Mb
Ciona (sea squirt) fosmids (improve existing genome)
Why?
Finished Released 180 Mb
Daphnia pulex (water flea) Done (draft) Released 200 Mb
Fugu rubripres (puffer fish) (fosmid)
Why?
Finished Released 400 Mb
Glycine Max (soybean)
Why?
In finishing   1115 Mb
Nematostella vectensis (burrowing anemone) In finishing Released 340 Mb
Phakopsora pachyrhizi (soybean rust pathogen) Done (draft) Reads released 50 Mb
Phytophthora sojae (soybean blight pathogen)
Why?
Done Released 62 Mb
Phytophthora ramorum (sudden oak death pathogen)
Why?
Done Released 60 Mb
Phaeodactylum tricornutum (a diatom) Finished Released 30 Mb
Phanerochaete chrysosporium (white rot fungus)
Why?
Done Released 30 Mb
Populus trichocarpa (black cottonwood)
Why?
In finishing (at Stanford) Released 550 Mb
Trichoderma reesei (a filamentous fungus)
Why?
Done (draft) Released (draft) 30 Mb
Xenopus tropicalis (western clawed frog) (improve existing genome to ~7.5x)
Why?
Finished Released 1.7 Gb
Zea mays (corn) In production Reads released 2.2 Gb

*"Pending" indicates that we are waiting for DNA or the DNA is waiting to enter the production process; "in production" includes both library creation and production sequencing; "draft assembly" is the first assembly, made without finishing the genome; "finishing" is postproduction work not carried out for all organisms; "final assembly" is the process of assembling the finished genome; "annotation" refers to automated finding of genes and assignment of functions; genomes on which we do not plan further work are labeled "done".

**"Reads released" indicates that reads have been sent to the GenBank Trace Archive; release dates indicate the date an assembly was made publicly available.