FY2007 Sequencing for the
DOE Microbial Genome Program
For more information about the DOE Office of Science's Microbial Genome Program, see http://microbialgenomics.energy.gov/. For more information about microbial sequencing at JGI, contact David Bruce. This page is verified at the beginning of every month.
| Organism(s) | Status* | Public Release** | Est. Genome Size |
|---|---|---|---|
| Acremonium alcalophilum ATCC90507 | In production | 40 MB |
|
| Azolla Cyanobacterium, Arthrospira maxima, and Cyanobacterium JSC-1 | A.m. in assembly, JSC-1 in production, Azolla pending | NA | |
| bacterioplankton pool cDNA day, night, night + DOC1, night + DOC2 | night + DOC2 in production,others pending | NA |
|
| Clostridum carboxidivorans, Clostridium sp. strains, Clostridium straminisolvens, Clostridum thermocellum LQR1 DSM2360 , Clostridium thermocellum JW20 DSM 4150 Thermoanaerobacter italicus Ab9 DSM9252, T. ethanolicus X513, T. ethanoloicus X561, T. mathrani, Thermoanaerobacterium thermosaccharaolyticum, Thermoanaerobacterium xylanolyticum LX11 DSM7097 |
8 pending, 11 in production, 2 in finishing | 3.5-4.0 MB | |
| Cyanobiont in Azolla | In production | NA | |
| Elephant Grass Decomposer Community | Pending | NA |
|
| Exiguobacterium sp. AT1b | In finishing (at LANL) | NA | |
| Flavobacteria sp. MS024-2A, Flavobacteria sp. MS0243-3C, Flavobacteria sp. strains | Strain 3 in finishing (at LANL), strain 4 in assembly, others pending | NA | |
| Geobacillus sp. G11MC16, sp. WCH70, sp. Y412MC10 | In finishing (at LANL) | WCH70 3/24/2008 (draft) | 6.4 MB |
| Gluconacetobacter diazotrophicus 448, G.d. PAL 5 | PAL 5 in production, 448 pending | NA | |
| Gut consortium of Anoplophora glabripennis | In production | NA |
|
| Kosmotoga olearia TB 19.5.1 | In assembly | NA | |
| Lactobacillus buchneri B-30929 and NRRL B30929 | B-30929 in finishing, NRRL B30929 done (draft) | NA | |
| Lost City Methanosarcinales | In assembly | 3 MB |
|
| Methanosphaerula palustris E1-9c | In production | NA | |
| Mucor circinelloides CBS277.49 | In finishing | 36.05 MB |
|
| Paenibacillus sp. JDR-2 | In finishing | 2/25/2008 | NA |
| Pelotomaculum schinkii strain HH | In production | 3 MB |
|
| Phanerochaete carnosa | In production | 35 MB |
|
| Rhodosporidium babjevae WP1 | In production | 20 MB |
|
| Serpula lacrymans | In production | 25 MB |
|
| Sporotrichum thermophile ATCC42464 | Pending | 43 MB |
|
| Thermoacetogenium phaeum | In production | ||
| Tipula abdominalis gut | In production | NA |
|
| Tropical picophytoeukaryotes site 1, site 2, site 3 | 2 in production, 1 pending | NA |
|
| Vibrio furnissii | Pending | NA |
*"Pending" indicates that we are waiting for DNA or the DNA is waiting to enter the production process; "in production" includes both library creation and production sequencing; "draft assembly" is the first assembly, made without finishing the genome; "finishing" is postproduction work not carried out for all organisms; "final assembly" is the process of assembling the finished genome; genomes on which we do not plan further work are labeled "done".
**"Reads released" indicates that reads have been sent to the GenBank Trace Archive; release dates indicate the date an assembly was made publicly available.
