FY2005 Sequencing for the
DOE Microbial Genome Program
For more information about the DOE Office of Science's Microbial Genome Program, see http://microbialgenomics.energy.gov/. For more information about microbial sequencing at JGI, contact David Bruce. This page is verified at the beginning of every month.
Strains of Shewanella
| Organism |
Status* |
Public Release** |
Est. Genome Size |
| Shewanella baltica OS195 |
Finished |
11/30/2007 |
5 Mb |
| Shewanella sp. ANA-3 |
Finished |
11/2/2005 |
5 Mb |
| Shewanella sp. MR-4 |
Finished |
9/13/2006 |
5 Mb |
| Shewanella sp. MR-7 |
Finished |
9/13/2006 |
5 Mb |
| Shewanella sp. W3-18-1 |
Finished |
1/8/2007 |
5 Mb |
| Shewanella baltica OS223 |
In finishing (LANL) |
5/2/2007 (draft) |
5 Mb |
Strains of Chloroflexi
| Organism |
Status* |
Public Release** |
Est. Genome Size |
| Chloroflexus aggregans DSM 9485 |
In finishing (PGF) |
11/13/2006 (draft) |
5 Mb |
| Chloroflexus sp. Y-396-1 |
In production |
|
5 Mb |
| Chlorothrix halophila (Candidatus) |
Done (draft) |
|
5 Mb |
| Herpetosiphon aurantiacus DSM 785 |
Finished |
11/14/2007 |
5 Mb |
| Roseiflexus castenholzii HLO8 |
Finished |
9/17/2007 |
5 Mb |
| Roseiflexus sp. strain RS-1 |
Finished |
6/6/2007 |
5 Mb |
Strains of Rhodopseudomonas palustris
| Organism |
Status* |
Public Release** |
Est. Genome Size |
| R. palustris BisA53 |
Finished |
10/4/2006 |
5.5 Mb |
| R. palustris BisB5 |
Finished |
4/12/2006 |
4.9 Mb |
| R. palustris BisB18 |
Finished |
3/22/2006 |
5.5 Mb |
| R. palustris HaA2 |
Finished |
8/24/2005 |
5.5 Mb |
Organisms Involved in Microbial Arsenic Transformation
| Organism |
Status* |
Public Release** |
Est. Genome Size |
| Bacillus selenitireducens MLS-10 |
In finishing (LANL) |
11/5/2007 (draft) |
2-4 Mb |
| Mono Lake Deltaproteobacter MLMS-1 |
Pending |
3/13/2006
(draft) |
6.06 Mb |
| Alkaliphilus oremlandii OhILAs |
Finished |
10/17/2007 |
2-4 Mb |
| Alkalilimnicola ehrlichei MLHE-1 |
Finished |
9/13/2006 |
2-4 Mb |
Two species of Micromonas pusilla
| Organism |
Status* |
Public Release** |
Est. Genome Size |
| M. pusilla NOUM17(RCC 299) |
Finished |
Released |
15 Mb |
| M. pusilla CCMP1545 |
In finishing |
Released (draft) |
15 Mb |
Single microbes
| Organism |
Status* |
Public Release** |
Est. Genome Size |
| Acidiphilium cryptum JF-5 |
Finished |
5/14/2007 |
2.46 Mb |
| Acidobacteria bacterium Ellin 345 |
Finished |
5/8/2006 |
3 Mb |
| Acidothermus cellulolyticus 11B |
Finished |
11/20/2006 |
6 Mb |
| Actinobacillus succinogenes 130Z |
Finished |
7/11/2007 |
2 Mb |
| Aspergillus niger |
Finished |
Released |
32 Mb |
| Aureococcus anophagefferens |
In finishing |
Released |
32 Mb |
| Bradyrhizobium sp. BTAi1 |
Finished |
5/14/2007 |
9.2 Mb |
| Burkholderia cepacia AMMD |
Finished |
10/4/2006 |
7.2 Mb |
| Caldicellulosiruptor saccharolyticus DSM 8903 |
Finished |
5/7/2007 |
4.3 Mb |
| Candidatus Ruthia magnifica Cm (Proteobacterial symbiont of the clam Calyptogena magnifica) |
Finished |
12/13/2006 |
4 Mb |
| Dehalococcoides sp. BAV1 |
Finished |
5/7/2007 |
2 Mb |
| Dehalococcoides sp. VS |
Done (draft) |
9/12/2007 |
1.5 Mb |
| Desulfotomaculum reducens MI-1 |
Finished |
4/4/2007 |
4 Mb |
| Flavobacterium johnsoniae UW101 |
Finished |
5/7/2007 |
6.07 Mb |
| Geobacter sp. FRC-32 |
In finishing (LLNL) |
7/10/2006 (draft) |
5 Mb |
| Halorhodospira halophila SL1 |
Finished |
1/22/2007 |
4 Mb |
| Methanosaeta thermophila PT |
Finished |
11/6/2006 |
3 Mb |
| Mycobacterium gilvum PYR-GCK |
Finished |
4/19/2007 |
5 Mb |
| Mycobacterium vanbaalenii PYR-1 |
Finished |
1/3/2007 |
6.46 Mb |
| Nectria haematococca MPVI |
Finished |
Released |
40 Mb |
| Polaromonas naphthalenivorans CJ2 |
Finished |
1/22/2007 |
6 Mb |
| Postia Placenta |
Finished |
Released |
40 Mb |
| Pseudoalteromonas atlantica T6c |
Finished |
6/28/2006 |
3.5 Mb |
| Pseudomonas putida F1 |
Finished |
6/6/2007 |
6.2 Mb |
| Psychromonas ingrahamii |
Finished |
1/8/2007 |
4 Mb |
| Xanthobacter autotrophicus Py2 |
Finished |
8/8/2007 |
5 Mb |
Communities
| Organism |
Status* |
Public Release** |
| Microbial Population from The Cedars (California) |
Pending |
|
| Acid mine drainage community (Iron Mountain, California) |
Finished |
|
| Obsidian Hot Spring (Yellowstone: Acyclobacillus sp., Dictyoglomus turgidum, Geobacillus sp Y412MC61, Geobacillus sp. Y412MC52, Hydrogenobaculum strain Y04AAS1, Mixed Community, Sulfolobus solfataricus 98/2, Sulfurihydrogenibium sp. Y03AOP1, Thermareobacter sp. Y412MC57) |
Community done (draft), A. sp., G. Y412MC61, G. Y412MC52, S.s., and T. Y412MC57 in production, D.t., H. Y04AAS1 and S. Y03AOP1 in finishing |
Sulfurihydrogenibium sp. YO3AOP1 released 2/25/2008 (draft), Hydrogenobaculum Y04AAS1 released 8/13/2007 |
| PAH Degrading Mycobacteria (Mycobacterium sp. MCS, JLS, and KMS |
Finished |
sp. MCS, 06/ 12/06; sp. JLS, 2/28/2007; sp. KMS, 1/3/2007 |
| Active methylotroph community from Lake Washington |
Finished |
|
*"Pending" indicates that we are waiting for DNA or the DNA is waiting to enter the production process; "in production" includes both library creation and production sequencing; "draft assembly" is the first assembly, made without finishing the genome; "finishing" is postproduction work not carried out for all organisms; "final assembly" is the process of assembling the finished genome; genomes on which we do not plan further work are labeled "done".
**"Reads released" indicates that reads have been sent to the GenBank Trace Archive; release dates indicate the date an assembly was made publicly available.
