FY2004 Sequencing for the
DOE Microbial Genome Program
For more information about the DOE Office of Science's Microbial Genome Program, see http://microbialgenomics.energy.gov/. For more information about microbial sequencing at JGI, contact David Bruce. This page is verified at the beginning of every month.
Chlorobia (avg:~2.4Mb)
| Organism |
Status* |
Public Release** |
Genome Size |
| Chlorobium ferrooxidans DSM 13031 |
In finishing (by collaborator) |
7/10/2006 (draft) |
2.40 Mb |
| Chlorobium limicola DSMZ 245 |
In finishing (by collaborator) |
4/8/05 (draft) |
2.4 Mb |
| Chlorobium phaeobacteroides BS1 |
In finishing (by collaborator) |
6/1/05 (draft) |
2.4 Mb |
| Chlorobium phaeobacteroides DSM 266 |
Finished |
12/13/06 |
2.3 Mb |
| Pelodictyon luteolum DSMZ 273 |
Finished |
2/18/05 |
2.3 Mb |
| Pelodictyon phaeoclathratiforme BU-1 (DSM 5477) |
In finishing (by collaborator) |
2/24/05 (draft) |
2.4 Mb |
| Prosthecochloris aestuarii DSM 271 |
In finishing (by collaborator) |
2/19/05 (draft) |
2.4 Mb |
| Prosthecochloris vibrioformis DSM 265 |
Finished |
4/19/07 |
2.4 Mb |
| Chlorobaculum parvum |
In finishing |
|
n/a |
| Chloroherpeton thalassium |
In finishing |
|
n/a |
Model Syntrophic Consortium
| Organism |
Status* |
Public Release ** |
Genome Size |
| Syntrophobacter fumaroxidans MPOB |
Finished |
11/6/06 |
3.3 Mb |
| Syntrophomonas wolfei Göttingen (DSM 2245B) |
Finished |
9/20/06 |
3 Mb |
| Methanospirillum hungatei JF1 |
Finished |
3/1/06 |
3.70 Mb |
Facultative Metal-reducing Gamma proteobacteria
| Organism |
Status* |
Public Release** |
Genome Size |
| Shewanella amazonensis SB2B |
Finished |
1/8/2007 |
4.40 Mb |
| Shewanella baltica OS155 |
Finished |
2/28/2007 |
5.20 Mb |
| Shewanella baltica OS185 |
Finished |
7/18/2007 |
|
| Shewanella denitrificans OS217 |
Finished |
4/12/2006 |
4.70 Mb |
| Shewanella frigidimarina NCIMB 400 |
Finished |
9/20/2006 |
4.90 Mb |
| Shewanella putrefaciens 200 |
In finishing (LLNL) |
1/31/2007 (draft) |
4.5 Mb |
| Shewanella putrefaciens CN-32 |
Finished |
5/9/2007 |
4.5 Mb |
| Shewanella loihica PV-4 |
Finished |
3/19/2007 |
4.5 Mb |
Five bacteria involved in nitrification
| Organism |
Status* |
Public Release** |
Genome Size |
| Nitrobacter hamburgensis X14 |
Finished |
4/19/06 |
5.011530 Mb |
| Nitrobacter winogradskyi Nb-255 |
Finished |
5/13/05 |
3.40 Mb |
| Nitrosococcus oceani ATCC 19707 |
Finished |
5/13/05 |
3.5 Mb |
| Nitrosomonas eutropha C71 |
Finished |
9/13/06 |
2.70 Mb |
| Nitrosospira multiformis ATCC 25196 |
Finished |
1/9/05 |
3.20 Mb |
Single microbes
| Organism |
Status* |
Public Release** |
Genome Size |
| Alkaliphilus metalliredigenes QYMF |
Finished |
7/9/2007 |
4.5 Mb |
| Anaeromyxobacter dehalogenans 2CP-C |
Finished |
2/26/05 |
5.20 Mb |
| Arthrobacter sp. FB24 |
Finished |
11/6/06 |
5.20 Mb |
| Bath hot springs metagenome and thermophages Y4.1MC1, Y4.1MC4, and Y5.1MC23 |
Y4.1MC4 pending, Y4.1MC1 pending, Y5.1MC23 in finshing, metagenome done (draft) |
|
|
| Burkholderia cenocepacia AU 1054 |
Finished |
6/7/06 |
7.30 Mb |
| Burkholderia cenocepacia HI2424 |
Finished |
11/6/06 |
7.70 Mb |
| Chromohalobacter salexigens DSM 3043 |
Finished |
4/19/06 |
3.90 Mb |
| Clostridium beijerincki NCIMB 8052 |
Finished |
6/27/07 |
7.80 Mb |
| Clostridium phytofermentans ISDg |
Finished |
11/26/2007 |
5 Mb |
| Deinococcus geothermalis DSM 11300 |
Finished |
10/17/2007 |
3 Mb |
| Frankia sp. CcI3 |
Finished |
1/14/05 (draft) |
5.43 Mb |
| Frankia sp. EAN1pec |
Finished |
10/17/2007 |
10 Mb |
| Jannaschia sp. CCS1 |
Finished |
3/1/06 |
4.5 Mb |
| Nocardioides sp. JS614 |
Finished |
1/3/07 |
5.5 Mb |
| Paracoccus denitrificans PD1222 |
Finished |
1/3/07 |
3.70 Mb |
| Polaromonas sp. JS666 |
Finished |
4/12/06 |
5.20 Mb |
| Prochlorococcus marinus NATL2A |
Finished |
4/11/05 |
2 Mb |
| Psychrobacter cryohalolentis K5 |
Finished |
4/19/06 |
3.20 Mb |
| Silicibacter sp. TM1040 |
Finished |
6/7/06 |
3.20 Mb |
| Solibacter usitatus Ellin6076 |
Finished |
10/30/06 |
10.20 Mb |
| Sphingopyxis alaskensis RB2256 |
Finished |
6/7/06 |
3.20 Mb |
| Sulfurimonas denitrificans DSM 1251 |
Finished |
2/27/05 |
2.20 Mb |
| Synechococcus sp. CC9605 (oligotrophic) |
Finished |
2/26/05 |
2.5 Mb |
| Synechococcus sp. CC9902 (coastal) |
Finished |
2/26/05 |
2.5 Mb |
| Thermoanaerobacter pseudethanolicus 39E |
Finished |
2/13/08 |
3 Mb |
| Thermoanaerobacter sp. X514 |
Finished |
2/13/08 |
3 Mb |
| Thermus aquaticus Y51MC23 |
In finishing |
|
|
| Thiobacillus denitrificans ATCC 25259 |
Finished |
10/6/04 |
3 Mb |
| Thiomicrospira crunogena XCL-2 |
Finished |
5/13/05 |
2.40 Mb |
Eukaryotes
| Organism |
Status* |
Public Release** |
Genome Size |
| Glomus intraradices |
In production |
|
15 Mb |
| Laccaria bicolor |
In finishing (at Stanford) |
Released |
40 Mb |
| Pichia stipitis, CBS 6054 |
Finished |
Released |
12 Mb |
Communities
| Organism |
Status* |
Public Release** |
Genome Size |
| 200 BACs from anaerobic bioreactor granules |
Finished |
|
~100 Mb |
| acid mine drainage community |
Done (draft) |
|
~80 Mb |
| Picoplankton BACS from HOTS site |
In production |
|
~150 Mb |
| Boiling thermal pool |
In production |
|
~50 Mb |
*"Pending" indicates that we are waiting for DNA or the DNA is waiting to enter the production process; "in production" includes both library creation and production sequencing; "draft assembly" is the first assembly, made without finishing the genome; "finishing" is postproduction work not carried out for all organisms; "final assembly" is the process of assembling the finished genome; genomes on which we do not plan further work are labeled "done".
**"Reads released" indicates that reads have been sent to the GenBank Trace Archive; release dates indicate the date an assembly was made publicly available.
