FY2004 Sequencing for the
DOE Microbial Genome Program
For status information, see the Genome Projects section. For more information about the DOE Office of Science's Microbial Genome Program, see http://microbialgenomics.energy.gov/. For more information about microbial sequencing at JGI, contact David Bruce.
Chlorobia (avg:~2.4Mb)
| Organism |
Genome Size |
| Chlorobium ferrooxidans DSM 13031 |
2.40 Mb |
| Chlorobium limicola DSMZ 245 |
2.4 Mb |
| Chlorobium phaeobacteroides BS1 |
2.4 Mb |
| Chlorobium phaeobacteroides DSM 266 |
2.3 Mb |
| Pelodictyon luteolum DSMZ 273 |
2.3 Mb |
| Pelodictyon phaeoclathratiforme BU-1 (DSM 5477) |
2.4 Mb |
| Prosthecochloris aestuarii DSM 271 |
2.4 Mb |
| Prosthecochloris vibrioformis DSM 265 |
2.4 Mb |
| Chlorobaculum parvum |
n/a |
| Chloroherpeton thalassium |
n/a |
Model Syntrophic Consortium
| Organism |
Genome Size |
| Syntrophobacter fumaroxidans MPOB |
3.3 Mb |
| Syntrophomonas wolfei Göttingen (DSM 2245B) |
3 Mb |
| Methanospirillum hungatei JF1 |
3.70 Mb |
Facultative Metal-reducing Gamma proteobacteria
| Organism |
Genome Size |
| Shewanella amazonensis SB2B |
4.40 Mb |
| Shewanella baltica OS155 |
5.20 Mb |
| Shewanella baltica OS185 |
|
| Shewanella denitrificans OS217 |
4.70 Mb |
| Shewanella frigidimarina NCIMB 400 |
4.90 Mb |
| Shewanella putrefaciens 200 |
4.5 Mb |
| Shewanella putrefaciens CN-32 |
4.5 Mb |
| Shewanella loihica PV-4 |
4.5 Mb |
Five bacteria involved in nitrification
| Organism |
Genome Size |
| Nitrobacter hamburgensis X14 |
5.011530 Mb |
| Nitrobacter winogradskyi Nb-255 |
3.40 Mb |
| Nitrosococcus oceani ATCC 19707 |
3.5 Mb |
| Nitrosomonas eutropha C71 |
2.70 Mb |
| Nitrosospira multiformis ATCC 25196 |
3.20 Mb |
Single microbes
| Organism |
Genome Size |
| Alkaliphilus metalliredigenes QYMF |
4.5 Mb |
| Anaeromyxobacter dehalogenans 2CP-C |
5.20 Mb |
| Arthrobacter sp. FB24 |
5.20 Mb |
| Bath hot springs metagenome and thermophages Y4.1MC1, Y4.1MC4, and Y5.1MC23 |
|
| Burkholderia cenocepacia AU 1054 |
7.30 Mb |
| Burkholderia cenocepacia HI2424 |
7.70 Mb |
| Chromohalobacter salexigens DSM 3043 |
3.90 Mb |
| Clostridium beijerincki NCIMB 8052 |
7.80 Mb |
| Clostridium phytofermentans ISDg |
5 Mb |
| Deinococcus geothermalis DSM 11300 |
3 Mb |
| Frankia sp. CcI3 |
5.43 Mb |
| Frankia sp. EAN1pec |
10 Mb |
| Jannaschia sp. CCS1 |
4.5 Mb |
| Nocardioides sp. JS614 |
5.5 Mb |
| Paracoccus denitrificans PD1222 |
3.70 Mb |
| Polaromonas sp. JS666 |
5.20 Mb |
| Prochlorococcus marinus NATL2A |
2 Mb |
| Psychrobacter cryohalolentis K5 |
3.20 Mb |
| Silicibacter sp. TM1040 |
3.20 Mb |
| Solibacter usitatus Ellin6076 |
10.20 Mb |
| Sphingopyxis alaskensis RB2256 |
3.20 Mb |
| Sulfurimonas denitrificans DSM 1251 |
2.20 Mb |
| Synechococcus sp. CC9605 (oligotrophic) |
2.5 Mb |
| Synechococcus sp. CC9902 (coastal) |
2.5 Mb |
| Thermoanaerobacter pseudethanolicus 39E |
3 Mb |
| Thermoanaerobacter sp. X514 |
3 Mb |
| Thermus aquaticus Y51MC23 |
|
| Thiobacillus denitrificans ATCC 25259 |
3 Mb |
| Thiomicrospira crunogena XCL-2 |
2.40 Mb |
Eukaryotes
| Organism |
Genome Size |
| Glomus intraradices |
15 Mb |
| Laccaria bicolor |
40 Mb |
| Pichia stipitis, CBS 6054 |
12 Mb |
Communities
| Organism |
Genome Size |
| 200 BACs from anaerobic bioreactor granules |
~100 Mb |
| acid mine drainage community |
~80 Mb |
| Picoplankton BACS from HOTS site |
~150 Mb |
| Boiling thermal pool |
~50 Mb |
