Sequencing

Sequencing Strategy Sequencing Plans and Progress Statistics Why Sequence Them? Information for Collaborators Protocols Genome Portal Site

FY2002 Sequencing for the
DOE Microbial Genome Program

For more information about the DOE Office of Science's Microbial Genome Program, see http://microbialgenomics.energy.gov/. For more information about microbial sequencing at JGI, contact David Bruce. This page is verified at the beginning of every month.

Eukaryotes

Organism Status* Public Release** Genome Size
Thalassiosira pseudonana CCMP 1335 (diatom) In finishing (Stanford) Released 32 Mb

Lactic Acid Bacteria

Organism Status* Public Release** Genome Size
Bifidobacterium longum DJO10A Finished Released (draft) 2.4 Mb
Brevibacterium linens BL2 Finished Released (draft) 4.5 Mb
Lactobacillus brevis ATCC 367 Finished Released 1.8 Mb
Lactobacillus casei ATCC 334 Finished Released 2.8 Mb
Lactobacillus delbrueckii ATCC BAA-365 Finished Released 1.6 Mb
Lactobacillus gasseri ATCC 33323 Finished Released 1.9 Mb
Lactococcus lactis subsp. cremoris SK11 Finished Released 2.6 Mb
Leuconostoc mesenteroides ATCC 8293 Finished Released 2 Mb
Oenococcus oeni PSU-1 Finished Released 1.8 Mb
Pediococcus pentosaceus ATCC 25745 Finished Released 1.8 Mb
Streptococcus thermophilus LMD-9 Finished Released 1.8 Mb

Single Microbes

Organism Status* Public Release** Genome Size
Azotobacter vinelandii AvOP Finished (by collaborator) Released (draft) 5.33 Mb
Clostridium thermocellum ATCC 27405 Finished Released 2/28/2007 3.80 Mb
Dechloromonas aromatica RCB Finished Released 4.5 Mb
Desulfovibrio desulfuricans G20 Finished Released 3.73 Mb
Desulfuromonas acetoxidans DSM 684 Done (draft) 8/9/2006 4.1 Mb
Ehrlichia canis Jake Finished Released 1.60 Mb
Ehrlichia chaffeensis Sapulpa In finishing (LLNL) Released (draft) 1.80 Mb
Exiguobacterium sibiricum 255-15 Finished Released 4/7/2008 3.10 Mb
Geobacter metallireducens GS-15 Finished Released 4.30 Mb
Haemophilus somnus 129PT Finished Released 2.00 Mb
Haemophilus somnus 2336 Finished 3/3/2008  
Mesorhizobium sp. BNC1 Finished 7/17/2006 5 Mb
Methanococcoides burtonii DSM 6242 Finished Released 2.60 Mb
Pseudomonas syringae B728a Finished Released 6.10 Mb
Psychrobacter arcticus 273-4 Finished Released 2.60 Mb
Ralstonia eutropha JMP-134 Finished Released 7.25 Mb
Rhodospirillum rubrum ATCC 11170 Finished Released 4.40 Mb
Saccharophagus degradans 2-40 Finished Released 5.10 Mb
Streptococcus suis 89/1591 In finishing (LLNL) Released (draft) 2 Mb
Trichodesmium erythraeum IMS101 Finished 9/13/2006 7.80 Mb
Yersinia pestis Pestoides F Finished 4/25/2007 4.73 Mb

Community

Organism Status* Public Release**
Anaerobic Methane Oxidizing community Production Fosmids Released

*"Pending" indicates that we are waiting for DNA or the DNA is waiting to enter the production process; "in production" includes both library creation and production sequencing; "draft assembly" is the first assembly, made without finishing the genome; "finishing" is postproduction work not carried out for all organisms; "final assembly" is the process of assembling the finished genome; genomes on which we do not plan further work are labeled "done".

**"Reads released" indicates that reads have been sent to the GenBank Trace Archive; release dates indicate the date an assembly was made publicly available.