FY2002 Sequencing for the
DOE Microbial Genome Program
For more information about the DOE Office of Science's Microbial Genome Program, see http://microbialgenomics.energy.gov/. For more information about microbial sequencing at JGI, contact David Bruce. This page is verified at the beginning of every month.
Eukaryotes
| Organism |
Status* |
Public Release** |
Genome Size |
| Thalassiosira pseudonana CCMP 1335 (diatom) |
In finishing (Stanford) |
Released |
32 Mb |
Lactic Acid Bacteria
| Organism |
Status* |
Public Release** |
Genome Size |
| Bifidobacterium longum DJO10A |
Finished |
Released (draft) |
2.4 Mb |
| Brevibacterium linens BL2 |
Finished |
Released (draft) |
4.5 Mb |
| Lactobacillus brevis ATCC 367 |
Finished |
Released |
1.8 Mb |
| Lactobacillus casei ATCC 334 |
Finished |
Released |
2.8 Mb |
| Lactobacillus delbrueckii ATCC BAA-365 |
Finished |
Released |
1.6 Mb |
| Lactobacillus gasseri ATCC 33323 |
Finished |
Released |
1.9 Mb |
| Lactococcus lactis subsp. cremoris SK11 |
Finished |
Released |
2.6 Mb |
| Leuconostoc mesenteroides ATCC 8293 |
Finished |
Released |
2 Mb |
| Oenococcus oeni PSU-1 |
Finished |
Released |
1.8 Mb |
| Pediococcus pentosaceus ATCC 25745 |
Finished |
Released |
1.8 Mb |
| Streptococcus thermophilus LMD-9 |
Finished |
Released |
1.8 Mb |
Single Microbes
| Organism |
Status* |
Public Release** |
Genome Size |
| Azotobacter vinelandii AvOP |
Finished (by collaborator) |
Released (draft) |
5.33 Mb |
| Clostridium thermocellum ATCC 27405 |
Finished |
Released 2/28/2007 |
3.80 Mb |
| Dechloromonas aromatica RCB |
Finished |
Released |
4.5 Mb |
| Desulfovibrio desulfuricans G20 |
Finished |
Released |
3.73 Mb |
| Desulfuromonas acetoxidans DSM 684 |
Done (draft) |
8/9/2006 |
4.1 Mb |
| Ehrlichia canis Jake |
Finished |
Released |
1.60 Mb |
| Ehrlichia chaffeensis Sapulpa |
In finishing (LLNL) |
Released (draft) |
1.80 Mb |
| Exiguobacterium sibiricum 255-15 |
Finished |
Released 4/7/2008 |
3.10 Mb |
| Geobacter metallireducens GS-15 |
Finished |
Released |
4.30 Mb |
| Haemophilus somnus 129PT |
Finished |
Released |
2.00 Mb |
| Haemophilus somnus 2336 |
Finished |
3/3/2008 |
|
| Mesorhizobium sp. BNC1 |
Finished |
7/17/2006 |
5 Mb |
| Methanococcoides burtonii DSM 6242 |
Finished |
Released |
2.60 Mb |
| Pseudomonas syringae B728a |
Finished |
Released |
6.10 Mb |
| Psychrobacter arcticus 273-4 |
Finished |
Released |
2.60 Mb |
| Ralstonia eutropha JMP-134 |
Finished |
Released |
7.25 Mb |
| Rhodospirillum rubrum ATCC 11170 |
Finished |
Released |
4.40 Mb |
| Saccharophagus degradans 2-40 |
Finished |
Released |
5.10 Mb |
| Streptococcus suis 89/1591 |
In finishing (LLNL) |
Released (draft) |
2 Mb |
| Trichodesmium erythraeum IMS101 |
Finished |
9/13/2006 |
7.80 Mb |
| Yersinia pestis Pestoides F |
Finished |
4/25/2007 |
4.73 Mb |
Community
| Organism |
Status* |
Public Release** |
| Anaerobic Methane Oxidizing community |
Production |
Fosmids Released |
*"Pending" indicates that we are waiting for DNA or the DNA is waiting to enter the production process; "in production" includes both library creation and production sequencing; "draft assembly" is the first assembly, made without finishing the genome; "finishing" is postproduction work not carried out for all organisms; "final assembly" is the process of assembling the finished genome; genomes on which we do not plan further work are labeled "done".
**"Reads released" indicates that reads have been sent to the GenBank Trace Archive; release dates indicate the date an assembly was made publicly available.
