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… computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial … and reconstruct metabolic properties encoded within those genomes. Our aim is to more fully capture microbial and … on the assembly of metagenomic sequence data into microbial genomes, which is of fundamental value to improving our …

… well. One is to do DNA sequencing. So upon sequencing many genomes, now we don’t have to, as in the past, go randomly … with a unified language, but then you have to have an index. You have to have the computer-searching systems. So … with the rich information, you have [to have] the best indexes searching for this information. But if they’re not …

… Program uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work … catalog of viral, microbial, and microeukaryote genomes and mobile genetic elements, linked to custom … environments. Integrating metatranscriptomes and metagenomes can, for instance, deepens our understanding of …

… for faculty to “claim” the JGI’s unpublished microbial genomes, with the expectation that faculty will work with … Joint Genome Institute, builds upon thousands of microbial genomes that have been sequenced by the JGI though not … development and adoption of classroom modules Currently 206 genomes have been selected with 11 published manuscripts …

… I got the chance to do genome mining on more than 50,000 genomes that we derived from meta-genome sequences. As … so many bacteria, because it is so easy to sequence their genomes comparatively to especially plants. So yeah, so from … then, that we try to find biosynthetic gene clusters in genomes is by homology search. We’re building on the backs …

… and bioproducts. By sequencing and analyzing the genomes of these organisms, the program investigates the … culture collections to produce hundreds of diverse algal genomes, which will be made accessible through the PhycoCosm … for microbial eukaryotes, build fungal and algal pangenomes, and integrate multi-omics tools to enhance …

… and a tool for predicting natural product structures from genomes. And I was writing grants furiously to try to get … a number of years earlier as one of the first Streptomyces genomes that had just not  been released yet. And there was … rumors of people sequencing like these enormous numbers of genomes, like 20 genomes, which was just incredible at that …

… catalog : Beyond minimal draft and improved draft microbial genomes the program offers single-cell sequencing, … Expansion of sequence space:  The JGI generates reference genomes from diverse bacterial and archaeal lineages to … analysis and annotation of all publicly available genomes from three domains of life. It provides tools for …

… Plant Flagship Genomes are selected through discussion with the JGI Plant … Advisory Committee and DOE, designating a set of JGI plant genomes that are the most important to DOE mission and plant … datasets to further gene function research. The  Open Green Genomes (OGG) project seeks to develop comparative high …

… Download plant, algal, fungal and microbial genomes and metagenomes — top-quality genomic data, open to all researchers. … analysis and annotation of all publicly available genomes from three domains of life, in a uniquely integrated … metagenome sequence, in the context of reference isolate genomes included from the IMG/M system. …

… While an ever-increasing number of phage and virus genomes have been assembled and reported from metagenomes, our understanding of the impacts of these viruses … filter, cluster, annotate, and bin viruses from metagenomes. mSystems 9:e00888-24. …