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Natural Prodcast Episode 10: A Primer on Genome Mining
… found in Yu et al, APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2004, 1253–1262, 70:3 ALISON TAKEMURA: And so did you succeed in finding … Biotechnology . 2020 Nov 9. doi: 10.1038/s41587-020-0718-6) DAN UDWARY: Yeah, I think that might be a good example of … Microbiomes” paper is here . Read the associated JGI news release here . Software we discussed, used for genome …
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New Lineages of Life Group
… list available at Google Scholar. Dutkiewicz, Z. et al (2025) “ Proposal of Patescibacterium danicum gen. nov., sp. … genomes with GVClass. ”  npj Viruses, Volume 2 Article 60. …
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CSP New Investigator Call
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Natural Prodcast Episode 24: Jackie Winter and SMC
… reminds me almost working with Bill back in the ’50s and ’60s of the golden age of antibiotic discoveries. Everything … there a way to do that? DAN UDWARY: Well, so there’s good news and bad news on that. So one of the things that we’re … Metabolites Collaboratory SMC Workshop Materials from the 2023 JGI Annual Meeting Using the SMC Website API Endpoints …
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Natural Prodcast Episode 7: Ben Shen
… So I wanted to ask you also about – because you were in the news recently – TSRI has acquired the Pfizer strain … these natural products. So this gives you approximately a 6% successful drug discovery rate.   And this is 100 times … look at several natural product enediyne structures, Ben’s 2015 paper on genome mining for enediynes is one of my …
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Natural Prodcast Episode 14: Nigel Mouncey
… never forced it on me, but we always had these scientific news magazines lying around at home. And I would just pick … screening platform where we’d look at 10,000, 15,000, 20,000 mutants a week. We started doing a whole bunch of … Metabolites Science Program . Since his arrival in 2017, Nigel has led a vision for the JGI that sees secondary …
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Mining New Frontiers: The Critical Minerals and Materials Joint Call
… materials. The proposal submission deadline is March 31, 2026 .  … (CMMs). Click for a list of CMMs and the results of the 2023 DOE Critical Materials Assessment . While we expect most … the Molecular Foundry, the project needs to be scoped for 12 months or less. We can help you scope that part of the …
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Natural Prodcast Episode 17: Cassandra Quave
… scientists to think about, because if you look at the 36 hotspots, or terrestrial biodiversity hotspots that we … plants and bringing them back is not your jam, the good news is there’s this amazing resource that can be provided … you can place a pre-order for the paperback (available June 2022). You might also enjoy Foodie Pharmacology – a science …
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Natural Prodcast Episode 6: Marc Chevrette
… metabolism.  DAN: Hi again, and welcome to Episode 6 of Natural Prodcast. What you’re going to get here is the … that’s really popped up at funding agencies and the popular news recently because a lot of soldiers in the Iraq and … This is Episode 6 of Natural Prodcast, our conversation with Marc Chevrette, …
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Natural Prodcast Episode 12: Nadine Ziemert
… Europe. So if there are any kind of dated references to the news, that’s why. But it was a really fun conversation. And … all these very, very related genomes, right – on their 16S level, they’re almost identical! But seeing all these … in the field, and I’m looking forward to trying out ARTS 2.0, which was published shortly after we talked. …
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Ecology and evolution of viruses infecting uncultivated SUP05 bacteria as revealed by single-cell- and meta-genomics
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Natural Prodcast Episode 4: Nancy Keller
… we discussed in the primer podcasts ( part 1 here , part 2 here , and part 3 here ), which you should be able to find … do you check if they’re there? Like we always talk about 16S for bacteria, but we don’t talk about it so easily with … you look at the ITS region. That’s equivalent to the 16S. However, we did have a talk by Mark Stadler today who …
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