FY2006 Sequencing for the
DOE Microbial Genome Program
For more information about the DOE Office of Science's Microbial Genome Program, see http://microbialgenomics.energy.gov/. For more information about microbial sequencing at JGI, contact David Bruce. This page is verified at the beginning of every month.
| Organism(s) | Status* | Public Release** | Est. Genome Size |
|---|---|---|---|
| Anaeromyxobacter dehalogenans strain 2CP-1 | In finishing (at LANL) | 1/30/2008 (draft) | 5 MB |
| Acidithiobacillus ferrooxidans ATCC 53993 | In finishing | ||
| Anaeromyxobacter sp. Fw109-5 | Finished | 7/18/2007 | 5 MB |
| Anaeromyxobacter sp. K | In finishing (at LANL) | 9/12/2007 (draft) | 5 MB |
| Bison Pool, hydrothermal ecosystem | Done (draft) | NA | |
| Burkholderia ambifaria MC40-6 | Finished | 4/7/2008 | 7.4 MB |
| Burkholderia cenocepacia MC0-3 | Finished | 3/17/2008 | 7.9 MB |
| Burkholderia multivorans ATCC 17616 | Finished | 11/26/2007 | 6.8 MB |
| Burkholderia phymatum STM815 | Finished | 4/23/2008 | 8.9 MB |
| Burkholderia phytofirmans PsJN | Finished | 11/13/2006 (draft) | 8 MB |
| Chlorella sp. NC64A | Done (draft) | 40 MB | |
| Chlorella vulgaris C-169 | Done (draft) | 40 MB | |
| Clostridium cellulolyticum H10 | In finishing (at LANL) | 11/27/2006 (draft) | 5 MB |
| Comamonas testosteroni KF-1 | In finishing (at PGF) | 11/13/2006 (draft) | 6 MB |
| Dehalococcoides sp. Strain GT | In production | 1.5 MB | |
| Delftia acidovorans SPH-1 | Finished | 11/26/2007 | 6 MB |
| Desulfatibacillum alkenivorans AK-01 | Done (draft) | 10/31/2007 (draft) | 6 MB |
| Desulfococcus oleovorans Hxd3 | Finished | 11/7/2007 | 6 MB |
| Dictyostelium purpureum | Done (draft) | 34 MB | |
| Dinoroseobacter shibae DFL-12 | Finished | 10/10/2007 | 6 MB |
| Dunaliella salina UTEX | In production | 130 MB | |
| Enterobacter sp. 638 , | Finished | 4/19/2007 | 5 MB |
| Escherichia coli C str. ATCC 8739 | Finished | 3/17/2008 | 4 MB |
| Geobacter Lovleyi SZ | In finishing (LANL) | 11/27/2006 (draft) | 4 MB |
| Leptospirillum ferroxidans Markosian | In finishing (LANL) | 2.5 MB | |
| Marinomonas sp. strain MWYL1 | Finished | 7/11/2007 | 5 MB |
| Metallosphaera sedula DSM 5348 | Finished | 5/7/2007 | 1.89 MB |
| Methanococcus aeolicus Nankai-3 | Finished | 7/9/2007 | 2 MB |
| Methanococcus maripaludis C5 | Finished | 3/19/2007 | 2 MB |
| Methanococcus maripaludis C6 | Finished | 11/15/2007 | 2 MB |
| Methanococcus maripaludis C7 | Finished | 7/9/2007 | 2 MB |
| Methanococcus vannielii SB | Finished | 7/9/2007 | 2 MB |
| Methanococcus voltae A3 | In finishing (PGF) | 10/31/2007 (draft) | 2 MB |
| Methanoregula boonei 6A8 | Finished | 8/13/2007 | 3 MB |
| Methylobacterium chloromethanicum CM4 | In finishing (LANL) | 8/13/2007 | 7 MB |
| Methylobacterium extorquens PA1 | Finished | 1/14/2008 | 7 MB |
| Methylobacterium nodulans ORS 2060 | In finishing | 11/19/2007 (draft) | 7 MB |
| Methylobacterium populi BJ001 | Finished | 4/14/2008 | 7 MB |
| Methylobacterium radiotolerans JCM 2831 | Finished | 3/31/2008 | 7 MB |
| Methylobacterium sp. 4-46 | Finished | 2/27/2008 | 7 MB |
| Methylotroph strain L1N13 | Pending | 10 MB | |
| Nitrosopumilus maritimus SCM1 | Finished | 11/28/2007 | 3 MB |
| Parvibaculum lavamentivorans DS-1 | Finished | 8/8/2007 | 6 MB |
| Plasmids in prokaryotes | 12 pending, 9 done (draft), 6 In finishing (at PGF), 6 finished, 39 in production | 7 MB | |
| Poplar endophytic bacteria (Pseudomonas putida strain W619, Serratia proteamaculans 568, Stenotrophomonas maltophilia R551-3) | S.m. in finishing (LLNL), P.p. and S.p. finished, | P.p. released 3/17/2008, S.p. released 9/19/2007 , S.m. released 12/20/2006 (draft) | 37.3 MB |
| Prochlorococcus, its phages, and the surrounding microbial community at the Hawaii Ocean Times Series Station (HOT) | 13 pending, 9 in production, 1 in assembly, 7 done (draft), 1 in finishing, 3 finished | 2 GB | |
| Pseudomonas mendocina strain ymp | Finished | 5/9/2007 | 4.6 MB |
| Pseudomonas putida strain GB-1 | Finished | 2/13/2008 | 6 MB |
| Pseudo-nitzschia (diatom) | In production | 250 MB | |
| Ralstonia pickettii 12D | In finishing (at LLNL) | 6/18/2007 (draft) | 3 MB |
| Ralstonia pickettii 12J | Finished | 1/17/2007 (draft) | 3.5 MB |
| Rice endophyte metagenome | In production | 100 MB | |
| Schizophyllum commune | In assembly | 38 MB | |
| Shewanella halifaxensis HAW-EB4 | Finished | 2/27/2008 | 5 MB |
| Shewanella pealeana ATCC 700345 | Finished | 10/10/2007 | 5 MB |
| Shewanella sediminis HAW-EB3 | Finished | 9/19/2007 | 5 MB |
| Shewanella woodyi ATCC 51908 | Finished | 3/17/2008 | 5 MB |
| Sphingomonas wittichii Strain RW1 | Finished | 6/6/2007 | 5 MB |
| Sulfolobus islandicus strains (eight) | 7 in finishing (LANL), 1 done (draft) | M.16.4, 10/31/2007 (draft); U.3.28, 10/31/2007 (draft); L.D.8.5, 11/5/2007; Y.G.57.14, 11/5/2007; Y.N.15.51, 11/5/2007 | 24 MB |
| Thermosinus carboxydivorans Nor1 | In finishing (LANL) | 1/17/2007 (draft) | 3 MB |
| Trichoderma actroviride | In finishing (LANL) | 40 MB |
*"Pending" indicates that we are waiting for DNA or the DNA is waiting to enter the production process; "in production" includes both library creation and production sequencing; "draft assembly" is the first assembly, made without finishing the genome; "finishing" is postproduction work not carried out for all organisms; "final assembly" is the process of assembling the finished genome; genomes on which we do not plan further work are labeled "done".
**"Reads released" indicates that reads have been sent to the GenBank Trace Archive; release dates indicate the date an assembly was made publicly available.
