Sequencing

Sequencing Strategy Sequencing Plans and Progress Statistics Why Sequence Them? Information for Collaborators Protocols Genome Portal Site

FY2006 Sequencing for the
DOE Microbial Genome Program

For more information about the DOE Office of Science's Microbial Genome Program, see http://microbialgenomics.energy.gov/. For more information about microbial sequencing at JGI, contact David Bruce. This page is verified at the beginning of every month.

Organism(s) Status* Public Release** Est. Genome Size
Anaeromyxobacter dehalogenans strain 2CP-1 In finishing (at LANL) 1/30/2008 (draft) 5 MB
Acidithiobacillus ferrooxidans ATCC 53993 In finishing    
Anaeromyxobacter sp. Fw109-5 Finished 7/18/2007 5 MB
Anaeromyxobacter sp. K In finishing (at LANL) 9/12/2007 (draft) 5 MB
Bison Pool, hydrothermal ecosystem Done (draft)   NA
Burkholderia ambifaria MC40-6 Finished 4/7/2008 7.4 MB
Burkholderia cenocepacia MC0-3 Finished 3/17/2008 7.9 MB
Burkholderia multivorans ATCC 17616 Finished 11/26/2007 6.8 MB
Burkholderia phymatum STM815 Finished 4/23/2008 8.9 MB
Burkholderia phytofirmans PsJN Finished 11/13/2006 (draft) 8 MB
Chlorella sp. NC64A Done (draft)   40 MB
Chlorella vulgaris C-169 Done (draft)   40 MB
Clostridium cellulolyticum H10 In finishing (at LANL) 11/27/2006 (draft) 5 MB
Comamonas testosteroni KF-1 In finishing (at PGF) 11/13/2006 (draft) 6 MB
Dehalococcoides sp. Strain GT In production   1.5 MB
Delftia acidovorans SPH-1 Finished 11/26/2007 6 MB
Desulfatibacillum alkenivorans AK-01 Done (draft) 10/31/2007 (draft) 6 MB
Desulfococcus oleovorans Hxd3 Finished 11/7/2007 6 MB
Dictyostelium purpureum Done (draft)   34 MB
Dinoroseobacter shibae DFL-12 Finished 10/10/2007 6 MB
Dunaliella salina UTEX In production   130 MB
Enterobacter sp. 638 , Finished 4/19/2007 5 MB
Escherichia coli C str. ATCC 8739 Finished 3/17/2008 4 MB
Geobacter Lovleyi SZ In finishing (LANL) 11/27/2006 (draft) 4 MB
Leptospirillum ferroxidans Markosian In finishing (LANL)   2.5 MB
Marinomonas sp. strain MWYL1 Finished 7/11/2007 5 MB
Metallosphaera sedula DSM 5348 Finished 5/7/2007 1.89 MB
Methanococcus aeolicus Nankai-3 Finished 7/9/2007 2 MB
Methanococcus maripaludis C5 Finished 3/19/2007 2 MB
Methanococcus maripaludis C6 Finished 11/15/2007 2 MB
Methanococcus maripaludis C7 Finished 7/9/2007 2 MB
Methanococcus vannielii SB Finished 7/9/2007 2 MB
Methanococcus voltae A3 In finishing (PGF) 10/31/2007 (draft) 2 MB
Methanoregula boonei 6A8 Finished 8/13/2007 3 MB
Methylobacterium chloromethanicum CM4 In finishing (LANL) 8/13/2007 7 MB
Methylobacterium extorquens PA1 Finished 1/14/2008 7 MB
Methylobacterium nodulans ORS 2060 In finishing 11/19/2007 (draft) 7 MB
Methylobacterium populi BJ001 Finished 4/14/2008 7 MB
Methylobacterium radiotolerans JCM 2831 Finished 3/31/2008 7 MB
Methylobacterium sp. 4-46 Finished 2/27/2008 7 MB
Methylotroph strain L1N13 Pending   10 MB
Nitrosopumilus maritimus SCM1 Finished 11/28/2007 3 MB
Parvibaculum lavamentivorans DS-1 Finished 8/8/2007 6 MB
Plasmids in prokaryotes 12 pending, 9 done (draft), 6 In finishing (at PGF), 6 finished, 39 in production   7 MB
Poplar endophytic bacteria (Pseudomonas putida strain W619, Serratia proteamaculans 568, Stenotrophomonas maltophilia R551-3) S.m. in finishing (LLNL), P.p. and S.p. finished, P.p. released 3/17/2008, S.p. released 9/19/2007 , S.m. released 12/20/2006 (draft) 37.3 MB
Prochlorococcus, its phages, and the surrounding microbial community at the Hawaii Ocean Times Series Station (HOT) 13 pending, 9 in production, 1 in assembly, 7 done (draft), 1 in finishing, 3 finished   2 GB
Pseudomonas mendocina strain ymp Finished 5/9/2007 4.6 MB
Pseudomonas putida strain GB-1 Finished 2/13/2008 6 MB
Pseudo-nitzschia (diatom) In production   250 MB
Ralstonia pickettii 12D In finishing (at LLNL) 6/18/2007 (draft) 3 MB
Ralstonia pickettii 12J Finished 1/17/2007 (draft) 3.5 MB
Rice endophyte metagenome In production   100 MB
Schizophyllum commune In assembly   38 MB
Shewanella halifaxensis HAW-EB4 Finished 2/27/2008 5 MB
Shewanella pealeana ATCC 700345 Finished 10/10/2007 5 MB
Shewanella sediminis HAW-EB3 Finished 9/19/2007 5 MB
Shewanella woodyi ATCC 51908 Finished 3/17/2008 5 MB
Sphingomonas wittichii Strain RW1 Finished 6/6/2007 5 MB
Sulfolobus islandicus strains (eight) 7 in finishing (LANL), 1 done (draft) M.16.4, 10/31/2007 (draft); U.3.28, 10/31/2007 (draft); L.D.8.5, 11/5/2007; Y.G.57.14, 11/5/2007; Y.N.15.51, 11/5/2007 24 MB
Thermosinus carboxydivorans Nor1 In finishing (LANL) 1/17/2007 (draft) 3 MB
Trichoderma actroviride In finishing (LANL)   40 MB

*"Pending" indicates that we are waiting for DNA or the DNA is waiting to enter the production process; "in production" includes both library creation and production sequencing; "draft assembly" is the first assembly, made without finishing the genome; "finishing" is postproduction work not carried out for all organisms; "final assembly" is the process of assembling the finished genome; genomes on which we do not plan further work are labeled "done".

**"Reads released" indicates that reads have been sent to the GenBank Trace Archive; release dates indicate the date an assembly was made publicly available.