Agenda
Wednesday, June 7, 2006
| 8:30 | Shuttle bus departs from Embassy Suites to JGI |
|---|---|
| 8:45 | Sign-in and continental breakfast at JGI |
Genome Overview |
|
| 9:00-9:20 | Introductions (Igor Grigoriev, JGI; James Bristow, JGI; Steve Goodwin, USDA-ARS; Gert Kema, PRI) |
| 9:20-9:40 | Assembly (Hank Tu and Harris Shapiro, JGI) Slides |
| 9:40-10:00 | Genome Finishing (Jane Grimwood, Stanford Genome Center) Slides |
| 10:00-10:20 | Mapping and Genome Alignment (Alexander Wittenberg, PRI) Slides |
| 10:20-10:40 | Coffee break |
| 10:40-11:00 | Mitochondrial Genome (Bruce McDonald and Stefano Torriani, ETH -- by phone) Slides |
| 11:00-11:20 | ESTs (Peter Brokstein, JGI) Slides |
| 11:20-11:40 | Gene Modeling and Annotation (Andrea Aerts and Igor Grigoriev, JGI) Slides |
| 11:40-12:00 | Comparative Genome Analysis (Asaf Salamov, JGI) Slides |
| 12:00-12:20 | Phylogenomics (Paramvir Dehal, JGI) Slides |
| 12:20-1:30 | Working Lunch -- Summary of Manual Annotation (led by Igor Grigoriev ) |
| 1:30-1:50 | Gene families (Michael Thon, TAMU -- by phone) Slides: PPT, PDF |
| 1:50-2:10 | Chromatin and RNAi Proteins (Carolyn Napoli, University of Arizona) Slides |
Signal Transduction |
|
| 2:10-2:30 | Signal Transduction Pathways (Rahim Mehrabi, PRI) Slides |
| 2:30-4:00 | Q&A for Genome Portal and Manual Curation Tools (Andrea Aerts and Igor Grigoriev, JGI) Slides |
| 4:00 | JGI Tour |
| 5:15 | Shuttle bus departs from JGI to Embassy Suites |
Thursday, June 8, 2006
| 8:30 | Shuttle bus departs from Embassy Suites to JGI |
|---|---|
| 8:45 | Sign-in and continental breakfast at JGI |
Cell Cycle and Primary Metabolism |
|
| 9:00-9:20 | Fatty Acid and Sterol Biosynthesis, Energy Production (Jason Rudd for Bart Fraaije and Hans Cools, Rothamsted -- by phone) Slides |
| 9:20-9:40 | Cell Wall Metabolism (Andrew Foster, IBWF) Slides |
| 9:40-10:00 | Silencing Pathways (Ate van der Burgt, PRI) Slides |
| 10:00-10:20 | DNA Polymerases (Arnold Kuzniar, WUR -- by phone) Slides |
| 10:20-10:40 | Coffee break |
| 10:40-11:00 | Glycolysis, Amino Acid Production, Citric Acid Cycle (Edda Koopmann, Bayer Crop Science -- by phone ) |
| 11:00-11:20 | Incompatibility Genes (Theo van der Lee, PRI) Slides |
| 11:20-11:40 | Mating Type, Sexual Development, Meiosis (Gert Kema for Cees Waalwijk, PRI, Laura Conde-Ferráez, CICY -- by phone) Slides: PPT, PDF |
| 11:40-12:00 | Heatshock proteins (Jack Leunissen, WUR -- by phone) Slides |
| 12:00-1:00 | Working Lunch -- Discussions (led by Gert Kema) |
| 1:00-1:20 | Carbon Metabolism (Dan Ebbole, TAMU -- by phone) Slides |
| 1:20-1:40 | Iron Metabolism (Julie Zwiesler-Vollick, USDA-ARS ) Slides |
| 1:40-2:00 | Light-Regulated Genes, Photoreceptors, Conidiation (Burt Bluhm, USDA-ARS -- by phone) Slides |
Stress Responses |
|
| 2:00-2:20 | Stress Genes (Theo van der Lee, PRI) |
| 2:20-2:40 | Cell Communications (Natalia F. Martins, EMBRAPA) Slides |
| 2:40-3:00 | Cytoskeleton (Judith Burbidge, Syngenta) Slides |
| 3:00-3:20 | Coffee break |
| 3:20-3:40 | Proteases and Their Inhibitors, Glycosylation Pathways (Shoba Ranganathan, Sydney -- by phone) Slides |
| 3:40-5:00 | Work groups/Open discussions |
| 5:15 | Shuttle bus departs from JGI to Embassy Suites |
| 5:45 | Shuttle Bus departs Embassy Suites to Restaurant |
| 6:00 | Working Dinner Meeting -- Discussion of publication strategy |
Friday, June 9, 2006
| 8:30 | Shuttle bus departs from Embassy Suites to JGI |
|---|---|
| 8:45 | Sign-in and continental breakfast at JGI |
Genome Organization |
|
| 9:00-9:20 | High-Density Gene Clusters (Kim Hammond-Kosack, Rothamsted, John Antoniw, Rothamsted -- by phone) Slides |
| 9:20-9:40 | Microsatellites, Transposons and RIP (Steve Goodwin for Charles Crane, USDA-ARS; Emmanuel Quevillon, INRA/URGI; Jean Carlier, CIRAD -- by phone) Slides: Quevillon, Goodwin |
| 9:40-10:00 | Polyketide synththetases (Alice Churchill, Cornell) Slides: PPT, PDF |
| 10:00-10:20 | Terpene and nonribosomal peptide synthases (Andy Bailey, University of Bristol) Slides |
| 10:20-10:40 | Coffee break |
| 10:40-11:00 | P450s and other modifying genes (Bruno Donzelli, Cornell -- by phone) Slides |
| 11:00-11:20 | PHI-Base Genes and Transcription Factors (Kim Hammond-Kosack, Rothamsted) Slides |
Secretory System and Secreted Proteins |
|
| 11:20-11:40 | Transmembrane Proteins and Loops (Kim Hammond-Kosack, Rothamsted) Slides |
| 11:40-12:00 | Transporters (Lute-Harm Zwiers, FBC) Slides |
| 12:00-1:00 | Working Lunch - Future Plans (Led by Stephen Goodwin) |
| 1:00-1:20 | SNARE and Secreted Proteins (Julie Zwiesler-Vollick, Purdue) Slides |
| 1:20-1:40 | Exoproteome and Sexual Reproduction (Andy James, CICY; Blondy Canto-Canche and laura Conde-Ferráez, CICY -- by phone) Slides |
| 1:40-2:40 | Work groups/Open discussions |
| 2:40-3:00 | Coffee break |
| 3:00-5:00 | Jamboree Summary (Gert Kema, PRI; Steve Goodwin, USDA-ARS; Igor Grigoriev, JGI) |
| 5:15 | Shuttle bus departs from JGI to Embassy Suites |